Package: HLCtools 0.1.0
HLCtools: Calculate Herd Lying Concordance Metrics
Calculates Herd Lying Concordance (HLC) metrics from individual animal lying-behaviour data. HLC is a continuous framework for quantifying group-level behavioural cohesion from between-animal dispersion within observation intervals. The package implements standard deviation, mean absolute deviation, interquartile range, and entropy formulations, lying-weighted extensions, threshold-based synchrony comparisons, temporal summaries, and descriptive method-ranking tools. The HLC formulations are introduced in this package; related approaches to cattle behavioural synchrony include Raussi et al. (2011) <doi:10.1017/S1751731110001928>, Kok et al. (2023) <doi:10.1016/j.applanim.2023.105906>, and the activity metric framework of van Dixhoorn et al. (2024) <doi:10.24072/pcjournal.489>.
Authors:
HLCtools_0.1.0.tar.gz
HLCtools_0.1.0.zip(r-4.7-any)
HLCtools_0.1.0.tar.gz(r-4.7-any)HLCtools_0.1.0.tar.gz(r-4.6-any)
HLCtools_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
HLCtools/json (API)
| # Install 'HLCtools' in R: |
| install.packages('HLCtools', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/guilhermefranchi/hlctools/issues
- example_lies - Example lying behaviour dataset
Last updated from:4f78d8e267. Checks:5 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 129 | ||
| source / vignettes | OK | 240 | ||
| linux-release-x86_64 | OK | 123 | ||
| windows-devel-x86_64 | OK | 76 | ||
| wasm-release | OK | 109 |
Exports:calculate_hlccompare_hlc_methodshlc_methodshlc_weighted_methodsrank_hlc_methodssummarise_hlc_daily
Dependencies:clidplyrgenericsgluelifecyclemagrittrpillarpkgconfigR6rlangtibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate interval-level Herd Lying Concordance | calculate_hlc |
| Compare HLC methods | compare_hlc_methods |
| Example lying behaviour dataset | example_lies |
| List available unweighted HLC methods | hlc_methods |
| List available lying-weighted HLC methods | hlc_weighted_methods |
| Rank HLC methods for a dataset | rank_hlc_methods |
| Summarise HLC metrics by day | summarise_hlc_daily |
