{
  "_id": "6a6237c135834fefe99ec977",
  "Package": "HLCtools",
  "Title": "Calculate Herd Lying Concordance Metrics",
  "Version": "0.1.0",
  "Authors@R": "person(\ngiven = \"Guilherme\",\nfamily = \"Amorim Franchi\",\nemail = \"gaf@anivet.au.dk\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-7653-6512\")\n)",
  "Description": "Calculates Herd Lying Concordance (HLC) metrics from\nindividual animal lying-behaviour data. HLC is a continuous\nframework for quantifying group-level behavioural cohesion from\nbetween-animal dispersion within observation intervals. The\npackage implements standard deviation, mean absolute deviation,\ninterquartile range, and entropy formulations, lying-weighted\nextensions, threshold-based synchrony comparisons, temporal\nsummaries, and descriptive method-ranking tools. The HLC\nformulations are introduced in this package; related approaches\nto cattle behavioural synchrony include Raussi et al. (2011)\n<doi:10.1017/S1751731110001928>, Kok et al. (2023)\n<doi:10.1016/j.applanim.2023.105906>, and the activity metric\nframework of van Dixhoorn et al. (2024)\n<doi:10.24072/pcjournal.489>.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/guilhermefranchi/HLCtools",
  "BugReports": "https://github.com/guilhermefranchi/HLCtools/issues",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "LazyData": "true",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-23 15:45:30 UTC",
    "User": "root"
  },
  "Author": "Guilherme Amorim Franchi [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0001-7653-6512>)",
  "Maintainer": "Guilherme Amorim Franchi <gaf@anivet.au.dk>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-07-23 13:10:15 UTC",
  "RemoteUrl": "https://github.com/cran/HLCtools",
  "RemoteRef": "HEAD",
  "RemoteSha": "4f78d8e267311f9bc3b3e2084518fba87da15540",
  "_user": "cran",
  "_type": "src",
  "_file": "HLCtools_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/4565fe71cc43d9fec3e383a526217f996a01faa4427ec3e79c99185e92bf8c6b",
  "_filesize": 132905,
  "_sha256": "4565fe71cc43d9fec3e383a526217f996a01faa4427ec3e79c99185e92bf8c6b",
  "_expires": "2026-10-31T15:48:15.000Z",
  "_created": "2026-07-23T15:45:30.000Z",
  "_published": "2026-07-23T15:48:17.517Z",
  "_jobs": [
    {
      "job": 89256957575,
      "time": 129,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8569726385"
    },
    {
      "job": 89256957563,
      "time": 123,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8569723357"
    },
    {
      "job": 89255887686,
      "time": 240,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8569658099"
    },
    {
      "job": 89256957610,
      "time": 109,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8569715770"
    },
    {
      "job": 89256957645,
      "time": 76,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8569699135"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/30021697600",
  "_status": "success",
  "_upstream": "https://github.com/cran/HLCtools",
  "_commit": {
    "id": "4f78d8e267311f9bc3b3e2084518fba87da15540",
    "author": "Guilherme Amorim Franchi <gaf@anivet.au.dk>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.0\n",
    "time": 1784812215
  },
  "_maintainer": {
    "name": "Guilherme Amorim Franchi",
    "email": "gaf@anivet.au.dk",
    "login": "guilhermefranchi",
    "linkedin": "in/guilherme-amorim-franchi-045352376",
    "description": "Researcher & data enthusiast leveraging statistical expertise using R.",
    "uuid": 144438938,
    "orcid": "0000-0001-7653-6512"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-30",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.0",
      "date": "2026-07-23"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "guilhermefranchi",
      "count": 1,
      "uuid": 144438938
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 623,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/HLCtools"
  },
  "_devurl": "https://github.com/guilhermefranchi/hlctools",
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/HLCtools.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-07-23"
    }
  ],
  "_exports": [
    "calculate_hlc",
    "compare_hlc_methods",
    "hlc_methods",
    "hlc_weighted_methods",
    "rank_hlc_methods",
    "summarise_hlc_daily"
  ],
  "_datasets": [
    {
      "name": "example_lies",
      "title": "Example lying behaviour dataset",
      "object": "example_lies",
      "class": [
        "data.frame"
      ],
      "fields": [
        "group",
        "day",
        "week",
        "time",
        "cow",
        "lying"
      ],
      "rows": 40,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "calculate_hlc",
      "title": "Calculate interval-level Herd Lying Concordance",
      "topics": [
        "calculate_hlc"
      ]
    },
    {
      "page": "compare_hlc_methods",
      "title": "Compare HLC methods",
      "topics": [
        "compare_hlc_methods"
      ]
    },
    {
      "page": "example_lies",
      "title": "Example lying behaviour dataset",
      "topics": [
        "example_lies"
      ]
    },
    {
      "page": "hlc_methods",
      "title": "List available unweighted HLC methods",
      "topics": [
        "hlc_methods"
      ]
    },
    {
      "page": "hlc_weighted_methods",
      "title": "List available lying-weighted HLC methods",
      "topics": [
        "hlc_weighted_methods"
      ]
    },
    {
      "page": "rank_hlc_methods",
      "title": "Rank HLC methods for a dataset",
      "topics": [
        "rank_hlc_methods"
      ]
    },
    {
      "page": "summarise_hlc_daily",
      "title": "Summarise HLC metrics by day",
      "topics": [
        "summarise_hlc_daily"
      ]
    }
  ],
  "_readme": "https://github.com/cran/HLCtools/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "dplyr",
    "generics",
    "glue",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "getting-started.Rmd",
      "filename": "getting-started.html",
      "title": "Getting started with HLCtools",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Load package and example data",
        "Required data format",
        "Calculate interval-level HLC",
        "Summarise HLC by day",
        "Rank HLC methods for a dataset",
        "Interpretation",
        "Using HLC and lying-weighted HLC together",
        "Available HLC methods",
        "Notes on method choice",
        "Citation"
      ],
      "created": "2026-07-23 13:10:15",
      "modified": "2026-07-23 13:10:15",
      "commits": 1
    }
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "hlctools",
  "_universes": [
    "cran",
    "guilhermefranchi"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-07-23T15:47:42.000Z",
      "distro": "resolute",
      "commit": "4f78d8e267311f9bc3b3e2084518fba87da15540",
      "fileid": "https://r2.ropensci.org/a44d889f75916957609544637b17e5faa5800b152c47445ac5d542c89a6c2f73",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30021697600"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-07-23T15:47:35.000Z",
      "distro": "resolute",
      "commit": "4f78d8e267311f9bc3b3e2084518fba87da15540",
      "fileid": "https://r2.ropensci.org/1e9873193e42980010eb897ddba1765d25fcebce3f1af2a8537fa6cfcbff1857",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30021697600"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-07-23T15:47:34.000Z",
      "commit": "4f78d8e267311f9bc3b3e2084518fba87da15540",
      "fileid": "https://r2.ropensci.org/e5fecb5f84648de32664e1978937ce9e5ed3114c118868925576a6dad6e335c5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30021697600"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-07-23T15:46:40.000Z",
      "commit": "4f78d8e267311f9bc3b3e2084518fba87da15540",
      "fileid": "https://r2.ropensci.org/aba6a26ec2fb4aa53903d4f9c8dd5446354bad738462caebe957541bbe52396d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/30021697600"
    }
  ]
}