Why HGNChelper? | HGNChelper functionality | Mouse gene symbols | What exactly checkGeneSymbols does | Updating maps of aliased gene symbols | What does the expand.ambiguous argument do | Where do I find HGNChelper?
This package is hidden from search results because it is not hosted in the universe of the upstream owner
cran. To fix this you can add URL: https://cran.r-universe.dev/HGNChelper to the package DESCRIPTION file. See also theR-universe documentation.Package: HGNChelper 0.8.16
Levi Waldron
HGNChelper: Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols
Contains functions for identifying and correcting HGNC human gene symbols and MGI mouse gene symbols which have been converted to date format by Excel, withdrawn, or aliased. Also contains functions for reversibly converting between HGNC symbols and valid R names.
Authors:
HGNChelper_0.8.16.tar.gz
HGNChelper_0.8.16.zip(r-4.7-any)HGNChelper_0.8.16.zip(r-4.6-any)
HGNChelper_0.8.16.tar.gz(r-4.7-any)HGNChelper_0.8.16.tar.gz(r-4.6-any)
HGNChelper_0.8.16.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
HGNChelper/json (API)
| # Install 'HGNChelper' in R: |
| install.packages('HGNChelper', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/waldronlab/hgnchelper/issues
Pkgdown/docs site:https://waldronlab.io
Datasets:
- hgnc.table - All current and withdrawn HGNC gene symbols and Excel-mogrified symbols
- mouse.table - All current and withdrawn MGI mouse symbols and Excel-mogrified symbols
Last updated from:bb4045a7a7. Checks:6 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 119 | ||
| source / vignettes | OK | 182 | ||
| linux-release | OK | 148 | ||
| windows-devel | OK | 83 | ||
| windows-release | OK | 85 | ||
| wasm-release | OK | 91 |
Exports:affyToRcheckGeneSymbolsfindExcelGeneSymbolsgetCurrentHumanMapgetCurrentMouseMaprToAffyrToSymbolsymbolToR
Dependencies:data.tablesplitstackshape
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Title function to convert Affymetrix probeset identifiers to valid R names | affyToR |
| Identify outdated or Excel-mogrified gene symbols | checkGeneSymbols |
| Title function to identify Excel-mogrified gene symbols | findExcelGeneSymbols |
| Get the current maps for correcting gene symbols | getCurrentHumanMap getCurrentMaps getCurrentMouseMap |
| All current and withdrawn HGNC gene symbols and Excel-mogrified symbols | hgnc.table |
| All current and withdrawn MGI mouse symbols and Excel-mogrified symbols | mouse.table |
| Title function to convert the output of affyToR back to the original Affymetrix probeset identifiers. | rToAffy |
| Title function to reverse the conversion made by symbolToR | rToSymbol |
| Title function to *reversibly* convert HGNC gene symbols to valid R names. | symbolToR |