Package: HGNChelper 0.8.15

Levi Waldron

HGNChelper: Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols

Contains functions for identifying and correcting HGNC human gene symbols and MGI mouse gene symbols which have been converted to date format by Excel, withdrawn, or aliased. Also contains functions for reversibly converting between HGNC symbols and valid R names.

Authors:Sehyun Oh [aut], Ayush Aggarwal [aut], Markus Riester [aut], Levi Waldron [aut, cre]

HGNChelper_0.8.15.tar.gz
HGNChelper_0.8.15.tar.gz(r-4.5-noble)HGNChelper_0.8.15.tar.gz(r-4.4-noble)
HGNChelper_0.8.15.tgz(r-4.4-emscripten)HGNChelper_0.8.15.tgz(r-4.3-emscripten)
HGNChelper.pdf |HGNChelper.html✨
HGNChelper/json (API)
NEWS

# Install 'HGNChelper' in R:
install.packages('HGNChelper', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/waldronlab/hgnchelper/issues

Datasets:
  • hgnc.table - All current and withdrawn HGNC gene symbols and Excel-mogrified symbols
  • mouse.table - All current and withdrawn MGI mouse symbols and Excel-mogrified symbols

5.46 score 3 packages 280 scripts 1.4k downloads 4 mentions 8 exports 2 dependencies

Last updated 6 days agofrom:330c96f9c3. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 17 2024
R-4.5-linuxOKNov 17 2024

Exports:affyToRcheckGeneSymbolsfindExcelGeneSymbolsgetCurrentHumanMapgetCurrentMouseMaprToAffyrToSymbolsymbolToR

Dependencies:data.tablesplitstackshape

HGNChelper Introduction

Levi Waldron and Markus Riester

Rendered fromindex.Rmdusingknitr::rmarkdownon Nov 17 2024.

Last update: 2024-05-19
Started: 2019-03-05