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  "Version": "0.8.16",
  "Date": "2026-11-01",
  "License": "GPL (>= 2.0)",
  "Title": "Identify and Correct Invalid HGNC Human Gene Symbols and MGI\nMouse Gene Symbols",
  "Description": "Contains functions for identifying and correcting HGNC\nhuman gene symbols and MGI mouse gene symbols which have been\nconverted to date format by Excel, withdrawn, or aliased. Also\ncontains functions for reversibly converting between HGNC\nsymbols and valid R names.",
  "URL": "https://github.com/waldronlab/HGNChelper,\nhttps://waldronlab.io/HGNChelper/",
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    "description": "I teach biostatistics, develop for Bioconductor, and have an active research program in cancer genomics and in metagenomic profiling of the human microbiome.",
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    },
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    "affyToR",
    "checkGeneSymbols",
    "findExcelGeneSymbols",
    "getCurrentHumanMap",
    "getCurrentMouseMap",
    "rToAffy",
    "rToSymbol",
    "symbolToR"
  ],
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    {
      "name": "hgnc.table",
      "title": "All current and withdrawn HGNC gene symbols and Excel-mogrified symbols",
      "object": "hgnc.table",
      "class": [
        "data.table",
        "data.frame"
      ],
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        "Symbol",
        "Approved.Symbol",
        "chromosome"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "mouse.table",
      "title": "All current and withdrawn MGI mouse symbols and Excel-mogrified symbols",
      "object": "mouse.table",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Symbol",
        "Approved.Symbol"
      ],
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      "table": true,
      "tojson": true
    }
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    {
      "page": "affyToR",
      "title": "Title function to convert Affymetrix probeset identifiers to valid R names",
      "topics": [
        "affyToR"
      ]
    },
    {
      "page": "checkGeneSymbols",
      "title": "Identify outdated or Excel-mogrified gene symbols",
      "topics": [
        "checkGeneSymbols"
      ]
    },
    {
      "page": "findExcelGeneSymbols",
      "title": "Title function to identify Excel-mogrified gene symbols",
      "topics": [
        "findExcelGeneSymbols"
      ]
    },
    {
      "page": "getCurrentMaps",
      "title": "Get the current maps for correcting gene symbols",
      "topics": [
        "getCurrentHumanMap",
        "getCurrentMaps",
        "getCurrentMouseMap"
      ]
    },
    {
      "page": "hgnc.table",
      "title": "All current and withdrawn HGNC gene symbols and Excel-mogrified symbols",
      "topics": [
        "hgnc.table"
      ]
    },
    {
      "page": "mouse.table",
      "title": "All current and withdrawn MGI mouse symbols and Excel-mogrified symbols",
      "topics": [
        "mouse.table"
      ]
    },
    {
      "page": "rToAffy",
      "title": "Title function to convert the output of affyToR back to the original Affymetrix probeset identifiers.",
      "topics": [
        "rToAffy"
      ]
    },
    {
      "page": "rToSymbol",
      "title": "Title function to reverse the conversion made by symbolToR",
      "topics": [
        "rToSymbol"
      ]
    },
    {
      "page": "symbolToR",
      "title": "Title function to *reversibly* convert HGNC gene symbols to valid R names.",
      "topics": [
        "symbolToR"
      ]
    }
  ],
  "_rundeps": [
    "data.table",
    "splitstackshape"
  ],
  "_vignettes": [
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      "source": "index.Rmd",
      "filename": "index.html",
      "title": "HGNChelper Introduction",
      "author": "Levi Waldron and Markus Riester",
      "engine": "knitr::rmarkdown",
      "headings": [
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        "HGNChelper functionality",
        "Mouse gene symbols",
        "What exactly checkGeneSymbols does",
        "Updating maps of aliased gene symbols",
        "What does the expand.ambiguous argument do",
        "Where do I find HGNChelper?"
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      "created": "2019-03-05 22:20:03",
      "modified": "2024-05-19 02:39:14",
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