Package: GeoModels 2.3.0

Moreno Bevilacqua

GeoModels: Procedures for Gaussian and Non Gaussian Geostatistical (Large) Data Analysis

Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) (fast) simulation of random fields, b) inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Flexible covariance models for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. See the URL for the papers associated with this package, as for instance, Bevilacqua and Gaetan (2015) <doi:10.1007/s11222-014-9460-6>, Bevilacqua et al. (2016) <doi:10.1007/s13253-016-0256-3>, Vallejos et al. (2020) <doi:10.1007/978-3-030-56681-4>, Bevilacqua et. al (2020) <doi:10.1002/env.2632>, Bevilacqua et. al (2021) <doi:10.1111/sjos.12447>, Bevilacqua et al. (2022) <doi:10.1016/j.jmva.2022.104949>, Morales-Navarrete et al. (2023) <doi:10.1080/01621459.2022.2140053>, and a large class of examples and tutorials.

Authors:Moreno Bevilacqua [aut, cre, cph], Víctor Morales-Oñate [ctb], Francisco Cuevas-Pacheco [ctb], Christian Caamaño-Carrillo [ctb]

GeoModels_2.3.0.tar.gz
GeoModels_2.3.0.zip(r-4.7-x86_64)GeoModels_2.3.0.zip(r-4.7-arm64)GeoModels_2.3.0.zip(r-4.6-x86_64)GeoModels_2.3.0.zip(r-4.6-arm64)
GeoModels_2.3.0.tar.gz(r-4.7-arm64)GeoModels_2.3.0.tar.gz(r-4.7-x86_64)GeoModels_2.3.0.tar.gz(r-4.6-arm64)GeoModels_2.3.0.tar.gz(r-4.6-x86_64)
GeoModels_2.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GeoModels/json (API)

# Install 'GeoModels' in R:
install.packages('GeoModels', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vmoprojs/geomodels/issues

Uses libs:
  • openblas– Optimized BLAS
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • anomalies - Annual Precipitation Anomalies in the U.S.
  • madagascartemp - July Average Temperature of Madagascar
  • rainNLD - April Precipitation over the Netherlands with Distance-to-Coast Covariate
  • spanish_wind - August monthly average wind speed in Spain between 1970-2000
  • winds - Irish Daily Wind Speeds
  • winds.coords - Weather Stations of the Irish Daily Wind Speeds

On CRAN:

Conda:

openblasopenmp

3.08 score 113 scripts 1.1k downloads 65 exports 38 dependencies

Last updated from:62c2afe221. Checks:10 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK183
linux-devel-x86_64OK176
source / vignettesOK247
linux-release-arm64OK178
linux-release-x86_64OK226
windows-devel-arm64OK350
windows-devel-x86_64OK289
windows-release-arm64OK321
windows-release-x86_64OK234
wasm-releaseOK125

Exports:CheckBivCheckDistanceCheckSphCheckSTCkCorrModelCkInputCkLikelihoodCkModelCkTypeCompIndLik2CompLikCompLik2CorrelationParCorrParamcorrsasGeoAnisoGeoCorrFctGeoCorrFct_CopGeoCovariogramGeoCovDisplayGeoCovmatrixGeoCVGeoDistancesGeoDoScoresGeoFitGeoFit2GeoKrigGeoKriglocGeoKriglocWeightsGeoKrigWeightsGeoNAGeoNeighborhoodGeoNeighbSelectGeoNeighIndexGeoOMPGeoOutlierGeoPitGeoQQGeoResidualsGeoScatterplotGeoScoresGeoSimGeoSimapproxGeoSimcondGeoSimCopulaGeoTestIndependenceGeoTestIsotropyGeoTestsGeoTestsupp_spaceGeoVarestGeoVarestbootstrapGeoVariogramGeoVariogramDirGeoWLSLikMargParamMatDecompMatInvMatLogDetMatSqrtNuisParamNuisParam2sp2GeoStartParamWlsStart

Dependencies:BHcodetoolscontfracdeSolvedigestdotCall64ellipticFastGPfieldsfuturefuture.applyglobalshypergeolatticelistenvmapsMASSMatrixMatrixModelsminqamnormtmvtnormnabornumDerivparallellypbivnormprogressrquantregRColorBrewerRcppRcppArmadilloRcppEigensnspamSparseMsurvivalVGAMviridisLite

Readme and manuals

Help Manual

Help pageTopics
Annual Precipitation Anomalies in the U.S.anomalies
Checking Bivariate Covariance ModelsCheckBiv
Checking Distance TypeCheckDistance
Checking if a covariance is valid only on the sphereCheckSph
Checking SpaceTime covariance modelsCheckST
Checking Correlation ModelCkCorrModel
Checking InputCkInput
Checking Composite-likelihood TypeCkLikelihood
Checking random field TypeCkModel
Checking Likelihood ObjectsCkType
Optimizes the Composite indipendence log-likelihoodCompIndLik2
Optimizes the Composite Log-likelihoodCompLik
Optimizes the Composite log-likelihoodCompLik2
Lists the Parameters of a Correlation ModelCorrelationPar
Lists the Parameters of a Correlation ModelCorrParam
Correlation Function for Sinh-Arcsinh random fieldscorrsas
Spatial Anisotropy correctionGeoAniso
Spatial and Spatio-temporal correlation or covariance of (non) Gaussian random fieldsGeoCorrFct
Correlation, Covariance, and Variogram Functions for Spatial Copula ModelsGeoCorrFct_Cop
Computes the fitted variogram model.GeoCovariogram
Image plot displaying the pattern of the sparsness of a covariance matrix.GeoCovDisplay
Spatial and Spatio-temporal Covariance Matrix of (non-)Gaussian random fieldsGeoCovmatrix
Repeated holdout kriging cross-validationGeoCV
Compute Distance Matrices (Euclidean, Chordal, or Geodesic)GeoDistances
Computation of drop-one predictive scoresGeoDoScores
Maximum-Likelihood-Based Fitting of Gaussian and non-Gaussian random fields.GeoFit print.GeoFit
Fitting Gaussian and Non-Gaussian Random Fields with Automatic Marginal InitializationGeoFit2
Fixed-margin nonseparable generalized Wendland and Matern space-time modelsGeoFixedMarginST
Spatial (bivariate) and spatio temporal optimal linear prediction for Gaussian and non-Gaussian random fields.GeoKrig
Spatial (bivariate) and spatio temporal optimal linear local prediction for Gaussian and non-Gaussian random fields.GeoKrigloc
Compute validated local Gaussian kriging weightsGeoKriglocWeights
Compute validated Gaussian kriging weights for spatial and spatio-temporal random fieldsGeoKrigWeights
Three-dimensional spatial coordinates in GeoModelsGeoModels-3D
Ordering Conventions for Spatio-temporal Data, Covariates and PredictionsGeoModels-spacetime-ordering spacetime-data-order spacetime-ordering
Deleting NA values (missing values) from a spatial or spatio-temporal dataset.GeoNA
Spatio (temporal) neighborhood selection for local kriging.GeoNeighborhood
Neighborhood Selection for Pairwise Composite Likelihood EstimationGeoNeighbSelect
Spatial, spatio-temporal, or bivariate nearest-neighbour indicesGeoNeighIndex
Configure Native OpenMP AccelerationGeoOMP
Spatial outlier detectionGeoOutlier
Probability Integral Transform for Fitted GeoModels ObjectsGeoPit
Quantile-quantile plotGeoQQ
Compute Residuals from a Fitted GeoModels ModelGeoResiduals
Scatterplots of Spatial or Spatio-temporal Pairs and Fitted Bivariate ContoursGeoScatterplot
Computation of predictive scoresGeoScores
Simulation of Gaussian and non-Gaussian random fields.GeoSim print.GeoSim
Fast simulation of Gaussian and non-Gaussian random fields.GeoSimapprox
Conditional simulation of spatial Gaussian and non-Gaussian random fieldsGeoSimcond
Simulation of Gaussian and non-Gaussian random fields using copula.GeoSimCopula print.GeoSimCopula
Parametric bootstrap test for absence of spatial dependenceGeoTestIndependence
Parametric Bootstrap Tests for Spatial IsotropyGeoTestIsotropy
Statistical Hypothesis Tests for Nested ModelsGeoTests
Parametric Bootstrap Test for Spatial SupportGeoTestsupp_space
Score-based variance estimation for 'GeoFit' objectsGeoVarest
Update a 'GeoFit' object using parametric bootstrap for std error estimation.GeoVarestbootstrap
Empirical semivariogram estimationGeoVariogram
Empirical directional semivariogramGeoVariogramDir
WLS of Gaussian random fieldsGeoWLS print.GeoWLS
Utility function for kriging computationgetInvC
Optimizes the Log LikelihoodLik
July Average Temperature of Madagascarmadagascartemp
Lists the Nuisance Parameters of a random fieldMargParam
Matrix decompositionMatDecomp
Square root, inverse and log determinant of a (semi)positive definite matrix, given a matrix decomposition.MatInv MatLogDet MatSqrt
Lists the Nuisance Parameters of a random fieldNuisParam
Internal function handling Nuisance Parameters of a random fieldNuisParam2
Plot Spatial and Spatio-temporal correlation or covariance of (non) Gaussian random fieldsplot.GeoCorrFct
Plot empirical spatial, spatio-temporal and bivariate semivariogramsplot.GeoVariogram
Plot empirical directional semi-variogramplot.GeoVariogramDir
April Precipitation over the Netherlands with Distance-to-Coast CovariaterainNLD
Circulant embedding simulation on a regular spatial gridSimCE
Extracting information from an sp or spacetime objectsp2Geo
August monthly average wind speed in Spain between 1970-2000spanish_wind
Initializes the Parameters for Estimation ProceduresStartParam
Irish Daily Wind Speedswinds
Weather Stations of the Irish Daily Wind Speedswinds.coords
Computes Starting Values based on Weighted Least SquaresWlsStart