Package: GCalcium 1.0.0
Andrew Tamalunas
GCalcium: A Data Manipulation and Analysis Package for Calcium Indicator Data
Provides shortcuts in extracting useful data points and summarizing waveform data. It is optimized for speed to work efficiently with large data sets so you can get to the analysis phase more quickly. It also utilizes a user-friendly format for use by both beginners and seasoned R users.
Authors:
GCalcium_1.0.0.tar.gz
GCalcium_1.0.0.tar.gz(r-4.5-noble)GCalcium_1.0.0.tar.gz(r-4.4-noble)
GCalcium_1.0.0.tgz(r-4.4-emscripten)GCalcium_1.0.0.tgz(r-4.3-emscripten)
GCalcium.pdf |GCalcium.html✨
GCalcium/json (API)
| # Install 'GCalcium' in R: |
| install.packages('GCalcium', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- GCaMP - Pre-filtered GCaMP calcium activity waveforms
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:f353f5b730. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 22 2024 |
| R-4.5-linux | OK | Aug 22 2024 |
Exports:averaged_trialsavg_curve_slopebetween_trial_changecentered_AUCconsecutive_trial_changefind_peaksformat_datainflect_pointsinflect_points_dfmoving_windowperc_baselineplot_trialswithin_trial_changez_score
Dependencies:bitopscaToolsclidplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6rlangtibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Averages signals across trials | averaged_trials |
| Get average curve slopes | avg_curve_slope |
| Compare mean activity between trials | between_trial_change |
| Compute centered area under curve | centered_AUC |
| Compare mean activity in consecutive trials | consecutive_trial_change |
| Get peaks/valleys in waveform data | find_peaks |
| Reformat and label data into GCalcium format | format_data |
| Pre-filtered GCaMP calcium activity waveforms | GCaMP |
| Find inflection pooints | inflect_points |
| Find inflection points and curve numbers | inflect_points_df |
| Summarize data within windows of time | moving_window |
| Find the percent change from baseline | perc_baseline |
| Plot specified trials | plot_trials |
| Get mean activity change within a trial | within_trial_change |
| Transform values into z scores | z_score |