Package: FamEvent 3.2
Yun-Hee Choi
FamEvent: Family Age-at-Onset Data Simulation and Penetrance Estimation
Simulates age-at-onset traits associated with a segregating major gene in family data obtained from population-based, clinic-based, or multi-stage designs. Appropriate ascertainment correction is utilized to estimate age-dependent penetrance functions either parametrically from the fitted model or nonparametrically from the data. The Expectation and Maximization algorithm can infer missing genotypes and carrier probabilities estimated from family's genotype and phenotype information or from a fitted model. Plot functions include pedigrees of simulated families and predicted penetrance curves based on specified parameter values. For more information see Choi, Y.-H., Briollais, L., He, W. and Kopciuk, K. (2021) FamEvent: An R Package for Generating and Modeling Time-to-Event Data in Family Designs, Journal of Statistical Software 97 (7), 1-30.
Authors:
FamEvent_3.2.tar.gz
FamEvent_3.2.tar.gz(r-4.5-noble)FamEvent_3.2.tar.gz(r-4.4-noble)
FamEvent_3.2.tgz(r-4.4-emscripten)FamEvent_3.2.tgz(r-4.3-emscripten)
FamEvent.pdf |FamEvent.html✨
FamEvent/json (API)
# Install 'FamEvent' in R: |
install.packages('FamEvent', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- LSfam - Ontario Lynch Syndrom families
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 months agofrom:8e0e70f0aa. Checks:OK: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 31 2024 |
R-4.5-linux | OK | Oct 31 2024 |
Exports:carrierprobfampowerpenetrancepenetrance_cmppenmodelpenmodel_cmppenmodelEMpenplotpenplot_cmpplot.penmodelplot.penmodel_cmpplot.simfamplot.simfam_cmpplot.simfam_tvcplot.simfam2print.penmodelprint.penmodel_cmpprint.summary.penmodelprint.summary.penmodel_cmpsimfamsimfam_cmpsimfam_tvcsimfam2summary.penmodelsummary.penmodel_cmpsummary.simfamsummary.simfam_cmpsummary.simfam_tvcsummary.simfam2
Dependencies:cmprskehaevaluatehighrkinship2knitrlatticeMASSMatrixmatrixcalcpracmaquadprogsurvivaltruncnormxfunyaml