Package: F2Adonis2 0.1.1

Lakviru Perera

F2Adonis2: PERMANOVA using the F2 Statistic

Implements the F2 statistic of Anderson et al. (2017) <doi:10.1111/anzs.12176> for permutational multivariate analysis of variance (PERMANOVA) on dissimilarity matrices. The F2 statistic uses group-specific dispersion estimates, so group centroids can be compared when dispersions differ and group sizes are unequal. P-values are obtained by permutation, bootstrap, or bias-adjusted bootstrap. The formula interface follows 'adonis2()' in the 'vegan' package.

Authors:Lakviru Perera [aut, cre, cph], Mark Greenwood [aut]

F2Adonis2_0.1.1.tar.gz
F2Adonis2_0.1.1.zip(r-4.7-any)F2Adonis2_0.1.1.zip(r-4.6-any)
F2Adonis2_0.1.1.tar.gz(r-4.7-any)F2Adonis2_0.1.1.tar.gz(r-4.6-any)
F2Adonis2_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
F2Adonis2/json (API)

# Install 'F2Adonis2' in R:
install.packages('F2Adonis2', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lakviruperera/f2adonis2/issues

Datasets:

On CRAN:

Conda:

3.00 score 1 exports 8 dependencies

Last updated from:259a43a2cb. Checks:6 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-develOK150
source / vignettesOK249
linux-releaseOK130
windows-develOK98
windows-releaseOK99
wasm-releaseOK114

Exports:F2_adonis2

Dependencies:clusterlatticeMASSMatrixmgcvnlmepermutevegan

Introduction_to_F2Adonis2
Summary | Statement of Need | Methodology: The $F_2$ Statistic | Resampling Methods | Univariate Comparison | Case Study 1: Norway Benthic Macrofauna | Load Data and Libraries | Visualizing Dispersion Heterogeneity | Global F2 PERMANOVA | Case Study 2: PKD Metabolomics | Implementation Details | References
Rendered fromIntroduction_to_F2Adonis2.Rmdusingknitr::rmarkdown

Last update: 2026-11-04
Started: 2026-11-04

PKD_Subsample_Study
Reproducing the paper's exact settings
Rendered fromPKD_Subsample_Study.Rmdusingknitr::rmarkdown

Last update: 2026-11-04
Started: 2026-11-04