Package: CoDiNA 1.1.2
Deisy Morselli Gysi
CoDiNA: Co-Expression Differential Network Analysis
Categorize links and nodes from multiple networks in 3 categories: Common links (alpha) specific links (gamma), and different links (beta). Also categorizes the links into sub-categories and groups. The package includes a visualization tool for the networks. More information about the methodology can be found at: Gysi et. al., 2018 <arxiv:1802.00828>.
Authors:
CoDiNA_1.1.2.tar.gz
CoDiNA_1.1.2.zip(r-4.7-any)CoDiNA_1.1.2.zip(r-4.6-any)
CoDiNA_1.1.2.tar.gz(r-4.7-any)CoDiNA_1.1.2.tar.gz(r-4.6-any)
CoDiNA_1.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CoDiNA/json (API)
| # Install 'CoDiNA' in R: |
| install.packages('CoDiNA', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:2c3b6d93e0. Checks:6 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 98 | ||
| source / vignettes | OK | 159 | ||
| linux-release | OK | 108 | ||
| windows-devel | OK | 68 | ||
| windows-release | OK | 68 | ||
| wasm-release | OK | 111 |
Exports:as.igraphClusterNodesMakeDiffNetnormalizeOrderNamesplot.CoDiNA
Dependencies:base64encbslibcachemclicpp11data.tabledigestevaluatefastmapfontawesomefsgluehighrhtmltoolshtmlwidgetsigraphjquerylibjsonliteknitrlatticelifecyclemagrittrMatrixmemoisemimepkgconfigplyrR6rappdirsRcppreshape2rlangrmarkdownsassstringistringrtinytexvctrsvisNetworkxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| .Random.seed | .Random.seed |
| as.igraph | as.igraph |
| AST | AST |
| ClusterNodes | ClusterNodes |
| CTR | CTR |
| GLI | GLI |
| MakeDiffNet | MakeDiffNet |
| normalize | normalize |
| OLI | OLI |
| OrderNames | OrderNames |
| plot.CoDiNA | plot.CoDiNA |
| print.CoDiNA | print.CoDiNA |
| summary.CoDiNA | summary.CoDiNA |