Package: CoDiNA 1.1.2
Deisy Morselli Gysi
CoDiNA: Co-Expression Differential Network Analysis
Categorize links and nodes from multiple networks in 3 categories: Common links (alpha) specific links (gamma), and different links (beta). Also categorizes the links into sub-categories and groups. The package includes a visualization tool for the networks. More information about the methodology can be found at: Gysi et. al., 2018 <arxiv:1802.00828>.
Authors:
CoDiNA_1.1.2.tar.gz
CoDiNA_1.1.2.tar.gz(r-4.5-noble)CoDiNA_1.1.2.tar.gz(r-4.4-noble)
CoDiNA_1.1.2.tgz(r-4.4-emscripten)CoDiNA_1.1.2.tgz(r-4.3-emscripten)
CoDiNA.pdf |CoDiNA.html✨
CoDiNA/json (API)
| # Install 'CoDiNA' in R: |
| install.packages('CoDiNA', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:2c3b6d93e0. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 13 2024 |
| R-4.5-linux | OK | Dec 13 2024 |
Exports:as.igraphClusterNodesMakeDiffNetnormalizeOrderNamesplot.CoDiNA
Dependencies:base64encbslibcachemclicpp11data.tabledigestevaluatefastmapfontawesomefsgluehighrhtmltoolshtmlwidgetsigraphjquerylibjsonliteknitrlatticelifecyclemagrittrMatrixmemoisemimepkgconfigplyrR6rappdirsRcppreshape2rlangrmarkdownsassstringistringrtinytexvctrsvisNetworkxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| .Random.seed | .Random.seed |
| as.igraph | as.igraph |
| AST | AST |
| ClusterNodes | ClusterNodes |
| CTR | CTR |
| GLI | GLI |
| MakeDiffNet | MakeDiffNet |
| normalize | normalize |
| OLI | OLI |
| OrderNames | OrderNames |
| plot.CoDiNA | plot.CoDiNA |
| print.CoDiNA | print.CoDiNA |
| summary.CoDiNA | summary.CoDiNA |