Package: CleanBSequences 2.3.0

Florencia I. Pozzi

CleanBSequences: Curing of Biological Sequences

Curates biological sequences massively, quickly, without errors and without internet connection. Biological sequences curing is performed by aligning the forward and / or revers primers or ends of cloning vectors with the sequences to be cleaned. After the alignment, new subsequences are generated without biological fragment not desired by the user. Pozzi et al (2020) <doi:10.1007/s00438-020-01671-z>.

Authors:Florencia I. Pozzi, Silvina A. Felitti

CleanBSequences_2.3.0.tar.gz
CleanBSequences_2.3.0.tar.gz(r-4.5-noble)CleanBSequences_2.3.0.tar.gz(r-4.4-noble)
CleanBSequences_2.3.0.tgz(r-4.4-emscripten)
CleanBSequences.pdf |CleanBSequences.html✨
CleanBSequences/json (API)

# Install 'CleanBSequences' in R:
install.packages('CleanBSequences', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 317 downloads 4 exports 20 dependencies

Last updated 8 months agofrom:d380c92ecb. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 06 2024
R-4.5-linuxOKDec 06 2024

Exports:DNAStringSetOPRDNAStringSetTPROnePrimerRemoveTwoPrimerRemove

Dependencies:askpassBiocGenericsBiostringscrayoncurlgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslpwalignR6S4VectorssysUCSC.utilsXVectorzlibbioc