Package: BioVizSeq 1.0.0
Shiqi Zhao
BioVizSeq: Visualizing the Elements Within Bio-Sequences
Visualizing the types and distribution of elements within bio-sequences. At the same time, We have developed a geom layer, geom_rrect(), that can generate rounded rectangles. No external references are used in the development of this package.
Authors:
BioVizSeq_1.0.0.tar.gz
BioVizSeq_1.0.0.tar.gz(r-4.5-noble)BioVizSeq_1.0.0.tar.gz(r-4.4-noble)
BioVizSeq_1.0.0.tgz(r-4.4-emscripten)BioVizSeq_1.0.0.tgz(r-4.3-emscripten)
BioVizSeq.pdf |BioVizSeq.html✨
BioVizSeq/json (API)
NEWS
| # Install 'BioVizSeq' in R: |
| install.packages('BioVizSeq', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 days agofrom:9519c4b419. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 22 2024 |
| R-4.5-linux | OK | Dec 22 2024 |
Exports:biovizseqcdd_plotcdd_to_loccombi_pfastalenggeom_rrectget_motif_locationgff_plotgff_to_locmeme_plotmotif_plotmotif_seqpfam_plotpfam_to_locplantcare_classifyplantcare_plotplantcare_statistic1plantcare_statistic2plantcare_to_locsmart_plotsmart_to_locupload_fa_to_plantcare
Dependencies:ade4apeaplotaskpassbase64encbslibcachemclicolorspacecommonmarkcpp11crayoncurldigestdplyrfansifarverfastmapfontawesomefsgenericsggfunggplot2ggplotifyggtreegluegridGraphicsgtablehtmltoolshttpuvhttrisobandjquerylibjsonlitelabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpatchworkpillarpixmappkgconfigpromisespurrrR6rappdirsRColorBrewerRcppRcppArmadillorlangsassscalessegmentedseqinrshinysourcetoolsspstringistringrsystibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithrxtableyulab.utils
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BioVizSeq shiny app start function. | biovizseq |
| cdd_plot | cdd_plot |
| cdd_to_loc | cdd_to_loc |
| combi_p | combi_p |
| fastaleng | fastaleng |
| geom_rrect | geom_rrect |
| get_motif_location | get_motif_location |
| gff_plot | gff_plot |
| gff_to_loc | gff_to_loc |
| meme_plot | meme_plot |
| motif_plot | motif_plot |
| motif_seq | motif_seq |
| pfam_plot | pfam_plot |
| pfam_to_loc | pfam_to_loc |
| plantcare_classify | plantcare_classify |
| plantcare_plot | plantcare_plot |
| plantcare_statistic1 | plantcare_statistic1 |
| plantcare_statistic2 | plantcare_statistic2 |
| plantcare_to_loc | plantcare_to_loc |
| smart_plot | smart_plot |
| smart_to_loc | smart_to_loc |
| upload_fa_to_plantcare | upload_fa_to_plantcare |
