Package: BioPred 1.0.2

Zihuan Liu

BioPred: An R Package for Biomarkers Analysis in Precision Medicine

Provides functions for training extreme gradient boosting model using propensity score A-learning and weight-learning methods. For further details, see Liu et al. (2024) <doi:10.1093/bioinformatics/btae592>.

Authors:Zihuan Liu [aut, cre], Yan Sun [aut], Xin Huang [aut]

BioPred_1.0.2.tar.gz
BioPred_1.0.2.tar.gz(r-4.5-noble)BioPred_1.0.2.tar.gz(r-4.4-noble)
BioPred_1.0.2.tgz(r-4.4-emscripten)BioPred_1.0.2.tgz(r-4.3-emscripten)
BioPred.pdf |BioPred.html
BioPred/json (API)

# Install 'BioPred' in R:
install.packages('BioPred', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.00 score 1 scripts 506 downloads 21 exports 100 dependencies

Last updated 21 days agofrom:4069efa5d7. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 05 2024
R-4.5-linuxOKNov 05 2024

Exports:cat_summarycdf_plotcut_perfeval_metric_bineval_metric_coneval_metric_surfixcut_binfixcut_confixcut_surgam_ctr_plotgam_plotget_subgroup_resultspredictive_biomarker_improc_binroc_bin_plotscat_cont_plotsubgrp_perfsubgrp_perf_predXGBoostSub_binXGBoostSub_conXGBoostSub_sur

Dependencies:abindbackportsbootbroomcarcarDataclicolorspacecommonmarkcorrplotcowplotcpp11curldata.tableDerivdoBydplyrevaluateexactRankTestsfansifarverFormulagenericsggplot2ggpubrggrepelggsciggsignifggtextgluegridExtragridtextgtablehighrisobandjpegjsonlitekm.ciKMsurvknitrlabelinglatticelifecyclelme4magrittrmarkdownMASSMatrixMatrixModelsmaxstatmgcvmicrobenchmarkminqamodelrmomentsmunsellmvtnormnlmenloptrnnetnortestnumDerivonewaytestspbkrtestpillarpkgconfigplyrpngpolynompROCPropCIspurrrquantregR6RColorBrewerRcppRcppEigenrlangrstatixscalesSparseMstringistringrsurvivalsurvminersurvMisctibbletidyrtidyselectutf8vctrsviridisLitewesandersonwithrxfunxgboostxml2xtableyamlzoo

BioPred Package Tutorial

Rendered fromTutorial.Rmdusingknitr::rmarkdownon Nov 05 2024.

Last update: 2024-11-04
Started: 2024-06-07