Package: AlteredPQR 0.1.0
Marija Buljan
AlteredPQR: Detection of Altered Protein Quantitative Relationships
Inference of protein complex states from quantitative proteomics data. The package takes information on known stable protein interactions (i.e. protein components of the same complex) and assesses how protein quantitative ratios change between different conditions. It reports protein pairs for which relative protein quantities to each other have been significantly altered in the tested condition.
Authors:
AlteredPQR_0.1.0.tar.gz
AlteredPQR_0.1.0.tar.gz(r-4.5-noble)AlteredPQR_0.1.0.tar.gz(r-4.4-noble)
AlteredPQR_0.1.0.tgz(r-4.4-emscripten)AlteredPQR_0.1.0.tgz(r-4.3-emscripten)
AlteredPQR.pdf |AlteredPQR.html✨
AlteredPQR/json (API)
| # Install 'AlteredPQR' in R: |
| install.packages('AlteredPQR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- int_pairs - Protein pairs
- quant_data_all - Proteomic measurements data matrix
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:9d8b22c0e7. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 18 2024 |
| R-4.5-linux | OK | Dec 18 2024 |
Exports:AlteredPQR_RBCorShift
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Identification of outlier log ratios in quantitative proteomic measurements for investigated protein pairs. | AlteredPQR_RB |
| Changes in correlation trends | CorShift |
| Protein pairs | int_pairs |
| Proteomic measurements data matrix | quant_data_all |