{ "_id": "6a15632aacfb0bcc41d6147e", "Package": "AlteredPQR", "Type": "Package", "Title": "Detection of Altered Protein Quantitative Relationships", "Version": "0.1.0", "Authors@R": "c(person(\"Marija\", \"Buljan\", role = c(\"aut\", \"cre\"), email = \"marija.buljan@empa.ch\"))", "Author": "Marija Buljan [aut, cre]", "Maintainer": "Marija Buljan ", "Description": "Inference of protein complex states from quantitative\nproteomics data. The package takes information on known stable\nprotein interactions (i.e. protein components of the same\ncomplex) and assesses how protein quantitative ratios change\nbetween different conditions. It reports protein pairs for\nwhich relative protein quantities to each other have been\nsignificantly altered in the tested condition.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "LazyData": "true", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-26 09:06:19 UTC", "User": "root" }, "Repository": "https://cran.r-universe.dev", "Date/Publication": "2023-06-10 13:00:02 UTC", "RemoteUrl": "https://github.com/cran/AlteredPQR", "RemoteRef": "HEAD", "RemoteSha": "9d8b22c0e768d8028eddc271a87eac3d8f7ce69e", "MD5sum": "3bebd80a4f4b557a8b39008bbf7f5863", "_user": "cran", "_type": "src", "_file": "AlteredPQR_0.1.0.tar.gz", "_fileid": "6a6dfc87e8ecfa3d61273a3f5611e35cf23b4d81f91cf5037f6fd9605c28020e", "_filesize": 346427, "_sha256": "6a6dfc87e8ecfa3d61273a3f5611e35cf23b4d81f91cf5037f6fd9605c28020e", "_created": "2026-05-26T09:06:19.000Z", "_published": "2026-05-26T09:08:58.757Z", "_distro": "noble", "_jobs": [ { "job": 77842166420, "time": 126, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7213092108" }, { "job": 77842166611, "time": 104, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7213085435" }, { "job": 77841756836, "time": 146, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7213048556" }, { "job": 77842166237, "time": 78, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7213075737" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/26442920415", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/AlteredPQR", "_commit": { "id": "9d8b22c0e768d8028eddc271a87eac3d8f7ce69e", "author": "Marija Buljan ", "committer": "cran-robot ", "message": "version 0.1.0\n", "time": 1686402002 }, "_maintainer": { "name": "Marija Buljan", "email": "marija.buljan@empa.ch" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "tools", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 207, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/AlteredPQR" }, "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/AlteredPQR.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2023-06-10" } ], "_exports": [ "AlteredPQR_RB", "CorShift" ], "_datasets": [ { "name": "int_pairs", "title": "Protein pairs", "object": "int_pairs", "class": [ "data.frame" ], "fields": [ "ProtA", "ProtB" ], "rows": 86505, "table": true, "tojson": true }, { "name": "quant_data_all", "title": "Proteomic measurements data matrix", "object": "quant_data_all", "class": [ "data.frame" ], "fields": [ "LumA_1", "LumA_2", "LumA_3", "LumA_4", "LumA_5", "LumA_6", "LumA_7", "LumA_8", "LumA_9", "LumA_10", "LumA_11", "LumA_12", "LumA_13", "LumA_14", "LumA_15", "LumA_16", "LumA_17", "LumA_18", "LumA_19", "LumA_20", "LumA_21", "LumA_22", "LumA_23", "Basal_1", "Basal_2", "Basal_3", "Basal_4", "Basal_5", "Basal_6", "Basal_7", "Basal_8", "Basal_9", "Basal_10", "Basal_11", "Basal_12", "Basal_13", "Basal_14", "Basal_15", "Basal_16", "Basal_17", "Basal_18" ], "rows": 36, "table": true, "tojson": true } ], "_help": [ { "page": "AlteredPQR_RB", "title": "Identification of outlier log ratios in quantitative proteomic measurements for investigated protein pairs.", "topics": [ "AlteredPQR_RB" ] }, { "page": "CorShift", "title": "Changes in correlation trends", "topics": [ "CorShift" ] }, { "page": "int_pairs_data", "title": "Protein pairs", "topics": [ "int_pairs" ] }, { "page": "quant_data_all_data", "title": "Proteomic measurements data matrix", "topics": [ "quant_data_all" ] } ], "_rundeps": [], "_vignettes": [ { "source": "AlteredPQR.Rnw", "filename": "AlteredPQR.pdf", "title": "Vignette for the AlteredPQR package", "engine": "utils::Sweave", "headings": [], "created": "2023-06-10 13:00:02", "modified": "2023-06-10 13:00:02", "commits": 1 } ], "_score": 2, "_indexed": true, "_nocasepkg": "alteredpqr", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.0", "date": "2026-05-26T09:08:32.000Z", "distro": "noble", "commit": "9d8b22c0e768d8028eddc271a87eac3d8f7ce69e", "fileid": "426518b5d288765165405b1a8c59f470be331f79ea677a557e4b19aa8c709a11", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26442920415" }, { "r": "4.6.0", "os": "linux", "version": "0.1.0", "date": "2026-05-26T09:08:11.000Z", "distro": "noble", "commit": "9d8b22c0e768d8028eddc271a87eac3d8f7ce69e", "fileid": "e22db74e69c91567d8b6c3710d8bf399510d047141e4db445ee0beee98bdc9a3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26442920415" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.0", "date": "2026-05-26T09:07:55.000Z", "commit": "9d8b22c0e768d8028eddc271a87eac3d8f7ce69e", "fileid": "63dfb4e352313009cf0b1142e9331a0a5ae8a92efe072fabc94aa7387269d64c", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/26442920415" } ] }