Package: Achilles 1.7.2

Frank DeFalco

Achilles: Achilles Data Source Characterization

Automated Characterization of Health Information at Large-Scale Longitudinal Evidence Systems. Creates a descriptive statistics summary for an Observational Medical Outcomes Partnership Common Data Model standardized data source. This package includes functions for executing summary queries on the specified data source and exporting reporting content for use across a variety of Observational Health Data Sciences and Informatics community applications.

Authors:Frank DeFalco [aut, cre], Patrick Ryan [aut], Martijn Schuemie [aut], Vojtech Huser [aut], Chris Knoll [aut], Ajit Londhe [aut], Taha Abdul-Basser [aut], Anthony Molinaro [aut], Observational Health Data Science and Informatics [cph]

Achilles_1.7.2.tar.gz
Achilles_1.7.2.tar.gz(r-4.5-noble)Achilles_1.7.2.tar.gz(r-4.4-noble)
Achilles_1.7.2.tgz(r-4.4-emscripten)Achilles_1.7.2.tgz(r-4.3-emscripten)
Achilles.pdf |Achilles.html✨
Achilles/json (API)
NEWS

# Install 'Achilles' in R:
install.packages('Achilles', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openjdk

4.06 score 114 scripts 527 downloads 34 exports 58 dependencies

Last updated 2 years agofrom:70772a19cf. Checks:OK: 1 WARNING: 1. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 01 2024
R-4.5-linuxWARNINGDec 01 2024

Exports:achillescreateIndicescreateTimeSeriesdropAllScratchTablesexportConditionEraToJsonexportConditionToJsonexportDashboardToJsonexportDataDensityToJsonexportDeathToJsonexportDrugEraToJsonexportDrugToJsonexportMeasurementToJsonexportMetaToJsonexportObservationPeriodToJsonexportObservationToJsonexportPerformanceToJsonexportPersonToJsonexportProcedureToJsonexportResultsToCSVexportToAresexportToJsonexportVisitDetailToJsonexportVisitToJsongetAnalysisDetailsgetSeasonalityScoregetTemporalDataisStationarylistMissingAnalysesoptimizeAtlasCacheperformTemporalCharacterizationrunMissingAnalysesshowReportTypessumAcrossYearstsCompleteYears

Dependencies:backportsbitbit64blobcheckmateclicliprcpp11crayoncurldata.tableDatabaseConnectorDBIdbplyrdigestdplyrfansigenericsgluehmsjsonlitelatticelifecyclelubridatemagrittrParallelLoggerpillarpkgconfigprettyunitsprogresspurrrquadprogquantmodR6RcppreadrrJavarlangsnowSqlRenderstringistringrtibbletidyrtidyselecttimechangetriebeardtseriesTTRtzdburltoolsutf8vctrsvroomwithrxml2xtszoo

Getting Started with Achilles

Rendered fromGettingStarted.Rmdusingknitr::rmarkdownon Dec 01 2024.

Last update: 2023-05-03
Started: 2023-05-03

Running Achilles on Your CDM

Rendered fromRunningAchilles.Rmdusingknitr::rmarkdownon Dec 01 2024.

Last update: 2023-05-03
Started: 2023-05-03

Readme and manuals

Help Manual

Help pageTopics
achillesachilles
Create indiciescreateIndices
createTimeSeriescreateTimeSeries
Drop all possible scratch tablesdropAllScratchTables
exportConditionEraToJsonexportConditionEraToJson
exportConditionToJsonexportConditionToJson
exportDashboardToJsonexportDashboardToJson
exportDataDensityToJsonexportDataDensityToJson
exportDeathToJsonexportDeathToJson
exportDrugEraToJsonexportDrugEraToJson
exportDrugToJsonexportDrugToJson
exportMeasurementToJsonexportMeasurementToJson
exportMetaToJsonexportMetaToJson
exportObservationPeriodToJsonexportObservationPeriodToJson
exportObservationToJsonexportObservationToJson
exportPerformanceToJson exportPerformanceToJsonexportPerformanceToJson
exportPersonToJsonexportPersonToJson
exportProcedureToJsonexportProcedureToJson
exportResultsToCSVexportResultsToCSV
exportToAresexportToAres
exportToJsonexportToJson
exportVisitDetailToJsonexportVisitDetailToJson
exportVisitToJsonexportVisitToJson
Get all analysis detailsgetAnalysisDetails
Get the seasonality score for a given monthly time seriesgetSeasonalityScore
getTemporalDatagetTemporalData
Determine whether or not a time series is stationary in the meanisStationary
listMissingAnalyseslistMissingAnalyses
Optimize atlas cacheoptimizeAtlasCache
performTemporalCharacterizationperformTemporalCharacterization
runMissingAnalysesrunMissingAnalyses
showReportTypesshowReportTypes
For a monhtly time series, compute sum and proportion by month across all yearssumAcrossYears
Trim a monthly time series object to so that partial years are removedtsCompleteYears