Package: whitening 1.4.0

Korbinian Strimmer

whitening: Whitening and High-Dimensional Canonical Correlation Analysis

Implements the whitening methods (ZCA, PCA, Cholesky, ZCA-cor, and PCA-cor) discussed in Kessy, Lewin, and Strimmer (2018) "Optimal whitening and decorrelation", <doi:10.1080/00031305.2016.1277159>, as well as the whitening approach to canonical correlation analysis allowing negative canonical correlations described in Jendoubi and Strimmer (2019) "A whitening approach to probabilistic canonical correlation analysis for omics data integration", <doi:10.1186/s12859-018-2572-9>. The package also offers functions to simulate random orthogonal matrices, compute (correlation) loadings and explained variation. It also contains four example data sets (extended UCI wine data, TCGA LUSC data, nutrimouse data, extended pitprops data).

Authors:Korbinian Strimmer, Takoua Jendoubi, Agnan Kessy, Alex Lewin

whitening_1.4.0.tar.gz
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whitening_1.4.0.tgz(r-4.4-emscripten)whitening_1.4.0.tgz(r-4.3-emscripten)
whitening.pdf |whitening.html✨
whitening/json (API)
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Bug tracker:https://github.com/strimmerlab/software/issues

10 exports 0.61 score 1 dependencies 2 dependents 53 scripts 479 downloads

Last updated 2 years agofrom:2bbfc878da. Checks:OK: 2. Indexed: yes.

Exports:ccacorplotexplainedVariationloadplotsccasimOrthowhitenwhiteningCrossCovwhiteningLoadingswhiteningMatrix

Dependencies:corpcor