Package: visit 2.2
Chenguang Wang
visit: Vaccine Phase I Design with Simultaneous Evaluation of Immunogenicity and Toxicity
Phase I clinical trials are the first step in drug development to test a new drug or drug combination on humans. Typical designs of Phase I trials use toxicity as the primary endpoint and aim to find the maximum tolerable dosage. However, these designs are poorly applicable for the development of cancer therapeutic vaccines because the expected safety concerns for these vaccines are not as much as cytotoxic agents. The primary objectives of a cancer therapeutic vaccine phase I trial thus often include determining whether the vaccine shows biologic activity and the minimum dose necessary to achieve a full immune or even clinical response. This package implements a Bayesian Phase I cancer vaccine trial design that allows simultaneous evaluation of safety and immunogenicity outcomes. See Wang et al. (2019) <doi:10.1002/sim.8021> for further details.
Authors:
visit_2.2.tar.gz
visit_2.2.tar.gz(r-4.5-noble)visit_2.2.tar.gz(r-4.4-noble)
visit.pdf |visit.html✨
visit/json (API)
# Install 'visit' in R: |
install.packages('visit', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 1 years agofrom:e22b97c4d5. Checks:OK: 1 NOTE: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 26 2024 |
R-4.5-linux-x86_64 | NOTE | Oct 26 2024 |
Exports:summary2vtDecMapvtInterimvtPostvtPriorParvtScenariovtShinyvtSimuvtSingleTrialvtTrack
Dependencies:abindbackportsBHbitbit64blobcachemcallrcheckmatechronclicolorspacecpp11DBIdescdistributionalfansifarverfastmapgenericsggplot2gluegridExtragsubfngtableinlineisobandlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmemoisemgcvmunsellnlmenumDerivpillarpkgbuildpkgconfigplogrposteriorprocessxprotopsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangRSQLiterstanrstantoolsscalessqldfStanHeaderstensorAtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
cancer Vaccine phase I design with Simultaneous evaluation of Immunogenecity and Toxicity | visit-package visit |
Parameters | parameters |
Plot decision map | plot.VTDEC |
Plot true parameters | plot.VTTRUEPS |
Summarize simulation results | summary.VTSIMU |
Print true probabilities | summary.VTTRUEPS |
S3 Summary function | summary2 |
Summarize simulation results | summary2.VTSIMU |
Print true probabilities in latex format | summary2.VTTRUEPS |
Obtain decision map information | vtDecMap |
Conduct interim analysis | vtInterim |
Postetrior sampling for given observed samples | vtPost |
Get prior distribution parameters | vtPriorPar |
Set simulation scenario | vtScenario |
Run Web-Based 'visit' application | vtShiny |
Conduct simulation study | vtSimu |
Simulate a single trial | vtSingleTrial |
Call STAN models for MCMC sampling | vtStan |
Plot the track plot of dose escalation | vtTrack |