Package: vimpclust 0.1.0

Madalina Olteanu

vimpclust: Variable Importance in Clustering

An implementation of methods related to sparse clustering and variable importance in clustering. The package currently allows to perform sparse k-means clustering with a group penalty, so that it automatically selects groups of numerical features. It also allows to perform sparse clustering and variable selection on mixed data (categorical and numerical features), by preprocessing each categorical feature as a group of numerical features. Several methods for visualizing and exploring the results are also provided. M. Chavent, J. Lacaille, A. Mourer and M. Olteanu (2020)<https://www.esann.org/sites/default/files/proceedings/2020/ES2020-103.pdf>.

Authors:Alex Mourer [aut], Marie Chavent [aut, ths], Madalina Olteanu [aut, ths, cre]

vimpclust_0.1.0.tar.gz
vimpclust_0.1.0.tar.gz(r-4.7-any)vimpclust_0.1.0.tar.gz(r-4.6-any)
vimpclust_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
vimpclust/json (API)

# Install 'vimpclust' in R:
install.packages('vimpclust', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • DataMice - Mice Protein Expression Data Set
  • HDdata - Statlog (Heart) Data Set

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.30 score 6 scripts 331 downloads 6 exports 22 dependencies

Last updated from:dae854c9a2. Checks:2 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE135
source / vignettesOK234
linux-release-x86_64NOTE137
wasm-releaseOK110

Exports:groupsoftgroupsparsewkminfo_clustrecodmixsparsewkmweightedss

Dependencies:clicolorspacecpp11farverggplot2gluegtableisobandlabelinglifecyclemclustPCAmixdataPolychromeR6RColorBrewerrlangS7scalesscatterplot3dvctrsviridisLitewithr

Group-sparse weighted k-means for numerical data
Basic function description | Arguments | Output | A case study: Mice dataset | Training the groupsparsewkm function | Results | Additional plots | Comparing the clustering with the "ground truth" | Bibliography

Last update: 2021-01-08
Started: 2021-01-08

Sparse weighted k-means for mixed data
Basic function description | Arguments | Output | A case study: HDdata dataset | Training the sparsewkm function | Results | Additional plots | Comparing the clustering with the "ground truth" | Cluster compostion | Bibliography

Last update: 2021-01-08
Started: 2021-01-08