VectorSurv | Data Retrieval | Write Data to file | Sample Data | Data Processing | Subsetting | Filtering and subsetting in 'dplyr' | Grouping and Summarising | Pivoting | Calculations | Abundance | Abundance Anomaly (comparison to 5 year average) | Infection Rate | Vector Index | Tables | Styling Dataframes with 'kable' | Data using 'datatables'
Package: vectorsurvR 1.6.3
VectorSurv Staff
vectorsurvR: Data Access and Analytical Tools for 'VectorSurv' Users
Allows registered 'VectorSurv' <https://vectorsurv.org/> users access to data through the 'VectorSurv API' <https://api.vectorsurv.org/>. Additionally provides functions for analysis and visualization.
Authors:
vectorsurvR_1.6.3.tar.gz
vectorsurvR_1.6.3.tar.gz(r-4.7-any)vectorsurvR_1.6.3.tar.gz(r-4.6-any)
vectorsurvR_1.6.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
vectorsurvR/json (API)
| # Install 'vectorsurvR' in R: |
| install.packages('vectorsurvR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- sample_collections - Sample Mosquito Collections Data
- sample_pools - Sample Pools Data
- sample_spatial - Sample Spatial Data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:39d514c6b7. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 288 | ||
| source / vignettes | OK | 253 | ||
| linux-release-x86_64 | OK | 265 | ||
| wasm-release | OK | 168 |
Exports:%>%getAbundancegetAbundanceAnomalygetAgencygetArthroCollectionsgetInfectionRategetPoolsgetPoolsComparisionTablegetSitesgetSpatialFeaturesgetSpeciesTablegetTokengetVectorIndexplotInvasiveSumsplotPoolsMapplotSpeciesMapplotVectorAbundance
Dependencies:askpassbase64encbslibcachemclassclassIntclicpp11crosstalkcurlDBIdigestdplyrDTe1071evaluatefarverfastmapfontawesomefsgenericsggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetshttr2isobandjquerylibjsonlitekableExtraKernSmoothknitrlabelinglaterlatticelazyevalleafletleaflet.minichartsleaflet.providerslifecyclelubridatemagrittrMASSmemoisemimeopensslotelpillarpkgconfigpngpromisesproxypurrrR6rappdirsrasterRColorBrewerRcpprlangrmarkdownrstudioapis2S7sassscalessfspstringistringrsvglitesyssystemfontsterratextshapingtibbletidyrtidyselecttimechangetinytexunitsutf8vctrsviridisviridisLitewithrwkxfunxml2yaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate abundance | getAbundance |
| Get Abundance Anomaly | getAbundanceAnomaly |
| Get Agency data | getAgency |
| Get arthropod collections data | getArthroCollections |
| Calculate infection rate | getInfectionRate |
| Get Pools data | getPools |
| Get Pools Frequency Table | getPoolsComparisionTable |
| Get region data | getRegions |
| Get sites data | getSites |
| Get Spatial Features data | getSpatialFeatures |
| Get Table For Species | getSpeciesTable |
| Get authentication token | getToken |
| Calculate vector index | getVectorIndex |
| Plot cumulative sum and interval sums of invasive species | plotInvasiveSums |
| Create Interactive Map of Mosquito Pool Testing Data | plotPoolsMap |
| Create Interactive Map of Mosquito Species Collection Data | plotSpeciesMap |
| Plot Vector Abundance Over Time with Comparison to Historical Averages | plotVectorAbundance |
| Process abundance anomaly | processAbunAnom |
| Sample Mosquito Collections Data | sample_collections |
| Sample Pools Data | sample_pools |
| Sample Spatial Data | sample_spatial |