TLDR | Example report preview | Overview | Bundled example files | Read raw header lines | Parse a VCF header | Inspect parsed content | Inference from the header | Structural variant example | Generate an HTML report | Bundled example HTML report | Summary
Package: vcfheader 0.1.0
Dylan Lawless
vcfheader: Fast Genetic Variant Call Format File Header Intelligence and Audit
Streams and parses variant call format file headers without reading full files. Provides structured metadata, validation, inference, and HTML reporting. For details on the specifications used see Danecek et al. (2021) <doi:10.1093/gigascience/giab008>.
Authors:
vcfheader_0.1.0.tar.gz
vcfheader_0.1.0.tar.gz(r-4.7-any)vcfheader_0.1.0.tar.gz(r-4.6-any)
vcfheader_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
vcfheader/json (API)
| # Install 'vcfheader' in R: |
| install.packages('vcfheader', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:9065f92a57. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 118 | ||
| source / vignettes | OK | 193 | ||
| linux-release-x86_64 | OK | 117 | ||
| wasm-release | OK | 102 |
Exports:parse_vcf_headerread_vcf_headervcfheader
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Parse a VCF header into a structured object | parse_vcf_header |
| Print a vcf_hdr object | print.vcf_hdr |
| Read the header lines from a VCF file | read_vcf_header |
| Generate an HTML report from a parsed VCF header | vcfheader |