Package: varitas 0.0.2

Adam Mills
varitas: Variant Calling in Targeted Analysis Sequencing Data
Multi-caller variant analysis pipeline for targeted analysis sequencing (TAS) data. Features a modular, automated workflow that can start with raw reads and produces a user-friendly PDF summary and a spreadsheet containing consensus variant information.
Authors:
varitas_0.0.2.tar.gz
varitas_0.0.2.tar.gz(r-4.5-noble)varitas_0.0.2.tar.gz(r-4.4-noble)
varitas_0.0.2.tgz(r-4.4-emscripten)varitas_0.0.2.tgz(r-4.3-emscripten)
varitas.pdf |varitas.html✨
varitas/json (API)
NEWS
# Install 'varitas' in R: |
install.packages('varitas', repos = 'https://cloud.r-project.org') |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:603e4ec1d6. Checks:1 OK, 2 NOTE. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 12 2025 |
R-4.5-linux | NOTE | Mar 12 2025 |
R-4.4-linux | NOTE | Mar 12 2025 |
Exports:date.stamp.file.nameget.varitas.optionsoverwrite.varitas.optionsprepare.miniseq.specificationsread.yamlrun.alignmentrun.annotationrun.post.processingrun.variant.callingrun.varitas.pipelinerun.varitas.pipeline.hybridset.varitas.options
Dependencies:assertthatclicodetoolscpp11doParalleldplyrfansiforeachformatRfutile.loggerfutile.optionsgenericsglueiteratorslambda.rlifecyclemagrittropenxlsxpillarpkgconfigpurrrR6Rcpprlangstringistringrtibbletidyrtidyselectutf8vctrsVennDiagramwithryamlzip
Citation
To cite package ‘varitas’ in publications use:
Mills A, Holgersen E, Cutts R, Haider S (2020). varitas: Variant Calling in Targeted Analysis Sequencing Data. R package version 0.0.2, https://CRAN.R-project.org/package=varitas.
Corresponding BibTeX entry:
@Manual{, title = {varitas: Variant Calling in Targeted Analysis Sequencing Data}, author = {Adam Mills and Erle Holgersen and Ros Cutts and Syed Haider}, year = {2020}, note = {R package version 0.0.2}, url = {https://CRAN.R-project.org/package=varitas}, }