Package: varitas 0.0.2
Adam Mills
varitas: Variant Calling in Targeted Analysis Sequencing Data
Multi-caller variant analysis pipeline for targeted analysis sequencing (TAS) data. Features a modular, automated workflow that can start with raw reads and produces a user-friendly PDF summary and a spreadsheet containing consensus variant information.
Authors:
varitas_0.0.2.tar.gz
varitas_0.0.2.tar.gz(r-4.5-noble)varitas_0.0.2.tar.gz(r-4.4-noble)
varitas_0.0.2.tgz(r-4.4-emscripten)varitas_0.0.2.tgz(r-4.3-emscripten)
varitas.pdf |varitas.html✨
varitas/json (API)
NEWS
# Install 'varitas' in R: |
install.packages('varitas', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:603e4ec1d6. Checks:OK: 1 NOTE: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 12 2024 |
R-4.5-linux | NOTE | Dec 12 2024 |
Exports:date.stamp.file.nameget.varitas.optionsoverwrite.varitas.optionsprepare.miniseq.specificationsread.yamlrun.alignmentrun.annotationrun.post.processingrun.variant.callingrun.varitas.pipelinerun.varitas.pipeline.hybridset.varitas.options
Dependencies:assertthatclicodetoolscpp11doParalleldplyrfansiforeachformatRfutile.loggerfutile.optionsgenericsglueiteratorslambda.rlifecyclemagrittropenxlsxpillarpkgconfigpurrrR6Rcpprlangstringistringrtibbletidyrtidyselectutf8vctrsVennDiagramwithryamlzip