Package: ufs 0.5.12

Gjalt-Jorn Peters

ufs: A Collection of Utilities

This is a new version of the 'userfriendlyscience' package, which has grown a bit unwieldy. Therefore, distinct functionalities are being 'consciously uncoupled' into different packages. This package contains the general-purpose tools and utilities (see the 'behaviorchange' package, the 'rosetta' package, and the soon-to-be-released 'scd' package for other functionality), and is the most direct 'successor' of the original 'userfriendlyscience' package. For example, this package contains a number of basic functions to create higher level plots, such as diamond plots, to easily plot sampling distributions, to generate confidence intervals, to plan study sample sizes for confidence intervals, and to do some basic operations such as (dis)attenuate effect size estimates.

Authors:Gjalt-Jorn Peters [aut, cre], Stefan Gruijters [ctb]

ufs_0.5.12.tar.gz
ufs_0.5.12.tar.gz(r-4.5-noble)ufs_0.5.12.tar.gz(r-4.4-noble)
ufs_0.5.12.tgz(r-4.4-emscripten)ufs_0.5.12.tgz(r-4.3-emscripten)
ufs.pdf |ufs.html✨
ufs/json (API)

# Install 'ufs' in R:

install.packages('ufs', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://gitlab.com/r-packages/ufs

Datasets:

bfi - 25 Personality items representing 5 factors
testRetestSimData - TestRetestSimData is a simulated dataframe used to demonstrate the testRetestAlpha coefficient function.

205 exports 1.51 score 71 dependencies 3 dependents 2 mentions 22 scripts 780 downloads

Last updated 6 months agofrom:775a56086e. Checks:OK: 1 NOTE: 1. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 06 2024
R-4.5-linux	NOTE	Sep 06 2024

Exports:%IN%A_VarghaDelaney aipedjmv aiperjmv areColors arr associationMatrix associationsDiamondPlot associationsToDiamondPlotDf attenuate.d attenuate.r BAC_plot biAxisDiamondPlot biDimColors carelessObject carelessReport cat0 checkDataIntegrity checkPkgs CIM CIM_partial cohensdCI computeEffectSize_d computeEffectSize_etasq computeEffectSize_omegasq computeEffectSize_r computeEffectSize_v computeStatistic_chisq computeStatistic_f computeStatistic_r computeStatistic_t confIntD confintdjmv confIntOmegaSq confIntProp confIntR confintrjmv confIntSD confIntV convert.b.to.t convert.cer.to.d convert.chisq.to.p convert.chisq.to.V convert.cohensf.to.omegasq convert.cohensfsq.to.omegasq convert.d.to.eer convert.d.to.logodds convert.d.to.nnc convert.d.to.r convert.d.to.t convert.d.to.U3 convert.d.to.variance convert.eer.to.d convert.etasq.to.cohensf convert.etasq.to.r convert.f.to.d convert.f.to.etasq convert.f.to.omegasq convert.f.to.p convert.fisherz.to.r convert.logodds.to.d convert.logodds.to.r convert.means.to.d convert.ncf.to.omegasq convert.omegasq.to.cohensf convert.omegasq.to.cohensfsq convert.omegasq.to.f convert.or.to.d convert.or.to.r convert.percentage.to.se convert.r.to.d convert.r.to.fisherz convert.r.to.p convert.r.to.t convert.t.to.d convert.t.to.p convert.t.to.r convert.V.to.r convertToNumeric cramersV dataShape dCohensd dd descr diamondCoordinates diamondPlot disattenuate.d disattenuate.r domegaSq duoComparisonDiamondPlot escapeRegex exceptionalScore exceptionalScores exportToHTML extractVarName fa_failsafe faConfInt factorLoadingDiamondCIplot factorLoadingHeatmap findShortestInterval formatCI formatPvalue formatR getDat getData ggBarChart ggBoxplot ggDiamondLayer ggEasyBar ggEasyRidge ggPie ggProportionPlot ggqq ggSave heading ifelseObj insertFigureCaption insertNumberedCaption insertTableCaption invertItem invertItems iqrOutlier irpplot is.even is.nr is.odd isTrue kblXtra knitAndSave knitFig makeScales massConvertToNumeric meanConfInt meansComparisonDiamondPlot meansDiamondPlot meansDiamondPlotjmv meanSDtoDiamondPlot multiResponse multiResponsejmv multiVarFreq normalHist normalityAssessment noZero opts parallelSubscales pCohensd pd pdExtreme pdInterval pdMild pomegaSq pwr.bootES pwr.cohensdCI pwr.confIntd pwr.confIntProp pwr.confIntR pwr.omegasq qCohensd qd qomegaSq quietGitLabUpdate quietRemotesInstall qVec rawDataDiamondLayer rbind_df_list rbind_dfs rCohensd rd regrInfluential repeatStr report repStr romegaSq safeRequire samplingDistribution scaleDiagnosis scaleDiagnosis_partial scaleStructure scaleStructure_partial scatterMatrix setCaptionNumberingKnitrHook setFigCapNumbering setTabCapNumbering sharedSubString simDataSet spearmanBrown spearmanBrown_requiredLength spearmanBrown_reversed strToFilename suspectParticipants testRetestAlpha testRetestCES testRetestReliability uniDimColors varsToDiamondPlotDf vecTxt vecTxtB vecTxtM vecTxtQ viridisPalette wrapVector zotero_construct_export_call zotero_download_and_export_items zotero_get_all_items zotero_nr_of_items

Dependencies:base64enc bslib cachem cli colorspace cpp11 digest diptest dplyr evaluate fansi farver fastmap fontawesome fs generics ggplot2 ggrepel ggridges glue GPArotation gridExtra gtable highr htmltools isoband jquerylib jsonlite kableExtra knitr labeling lattice lifecycle magrittr MASS Matrix memoise mgcv mime munsell nlme pander pillar pkgconfig plyr pwr R6 rappdirs RColorBrewer Rcpp rlang rmarkdown rmdpartials rstudioapi sass scales stringi stringr SuppDists svglite systemfonts tibble tidyselect tinytex utf8 vctrs viridisLite withr xfun xml2 yaml

Help page	Topics
Case insensitive version of %in%	%IN%
Vargha & Delaney's A	A_VarghaDelaney
Sample size for accuracy: d	aipedjmv
Sample size for accuracy: r	aiperjmv
Check whether elements of a vector are valid colors	areColors
Absolute Relative Risk and confidence interval	arr print.ufsARR
associationMatrix	associationMatrix pander.associationMatrix print.associationMatrix
A diamondplot with confidence intervals for associations	associationsDiamondPlot associationsToDiamondPlotDf
Attenuate a Cohen's d estimate for unreliability in the continuous variable	attenuate.d
Attenuate a Pearson's r estimate for unreliability in the measurements	attenuate.r
Bland-Altman Change plot	BAC_plot
25 Personality items representing 5 factors	bfi bfi-data
Diamondplot with two Y axes	biAxisDiamondPlot
Create colours for a response scale for an item	biDimColors uniDimColors
Compute diagnostics for careless responding	carelessObject
A report to help diagnosing careless responders	carelessReport
Concatenate to screen without spaces	cat0
Conveniently checking data integrity	checkDataIntegrity
Check for presence of a package	checkPkgs
Conceptual Independence Matrix	CIM CIM_partial knit_print.CIM
The distribution of Cohen's _d_	cohensdCI cohensDdistribution confIntD dCohensd dd pCohensd pd pdExtreme pdInterval pdMild pwr.cohensdCI pwr.confIntd qCohensd qd rCohensd rd
associationMatrix Helper Functions	associationMatrixESDefaults associationMatrixStatDefaults computeEffectSize_d computeEffectSize_etasq computeEffectSize_omegasq computeEffectSize_r computeEffectSize_v computeStatistic_chisq computeStatistic_f computeStatistic_r computeStatistic_t
Effect Size Confidence Interval: Cohens's d	confintdjmv
Confidence intervals for Omega Squared	confIntOmegaSq print.confIntOmegaSq
Confidence intervals for proportions, vectorized over all arguments	confIntProp
A function to compute a correlation's confidence interval	confIntR
Effect Size Confidence Interval: Pearson's r	confintrjmv
Confidence interval for standard deviation	confIntSD
conversion functions	convert convert.b.to.t convert.chisq.to.p convert.chisq.to.V convert.cohensf.to.omegasq convert.cohensfsq.to.omegasq convert.d.to.logodds convert.d.to.r convert.d.to.t convert.d.to.variance convert.etasq.to.cohensf convert.etasq.to.r convert.f.to.d convert.f.to.etasq convert.f.to.omegasq convert.f.to.p convert.fisherz.to.r convert.logodds.to.d convert.logodds.to.r convert.means.to.d convert.ncf.to.omegasq convert.omegasq.to.cohensf convert.omegasq.to.cohensfsq convert.omegasq.to.f convert.or.to.d convert.or.to.r convert.percentage.to.se convert.r.to.d convert.r.to.fisherz convert.r.to.p convert.r.to.t convert.t.to.d convert.t.to.p convert.t.to.r convert.V.to.r
Helper functions for Numbers Needed for Change	convert.cer.to.d convert.d.to.eer convert.d.to.nnc convert.eer.to.d
Convert Cohen's d to U3	convert.d.to.U3
Conveniently convert vectors to numeric	convertToNumeric
Cramer's V and its confidence interval	confIntV cramersV print.confIntV print.CramersV
normalityAssessment and samplingDistribution	dataShape normalityAssessment pander.dataShape pander.normalityAssessment print.dataShape print.normalityAssessment samplingDistribution
descr (or descriptives)	as.data.frame.descr descr descr.data.frame descr.default descriptives pander.descr print.descr
Basic ggplot2 diamond plot layer construction functions	diamondCoordinates ggDiamondLayer rawDataDiamondLayer varsToDiamondPlotDf
Basic diamond plot construction function	diamondPlot
Disattenuate a Cohen's d estimate for unreliability in the continuous variable	disattenuate.d
Disattentuate a Pearson's r estimate for unreliability	disattenuate.r
meansComparisonDiamondPlot and duoComparisonDiamondPlot	duoComparisonDiamondPlot meansComparisonDiamondPlot
Escapes any characters that would have special meaning in a reqular expression.	escapeBS escapeRegex
Find exceptional scores	exceptionalScore
Find exceptional scores	exceptionalScores
Exporting tables to HTML	exportToHTML
Extract variable names	extractVarName
Do factor-analysis, logging warnings and errors	fa_failsafe
Extract confidence bounds from psych's factor analysis object	faConfInt
Two-dimensional visualisation of factor analyses	factorLoadingDiamondCIplot
Two-dimensional visualisation of factor analyses	factorLoadingHeatmap
Find the shortest interval	findShortestInterval
Pretty formatting of confidence intervals	formatCI
Pretty formatting of _p_ values	formatPvalue
Pretty formatting of correlation coefficients	formatR
Use a dialog to load data from an SPSS file	getDat getData
Bar chart using ggplot	ggBarChart
Box plot using ggplot	ggBoxplot
Convenience functions for ggplots based on multiple variables	ggEasyBar ggEasyPlots ggEasyRidge
A ggplot pie chart	ggPie
Sample distribution based plotting of proportions	ggProportionPlot grid.draw.ggProportionPlot print.ggProportionPlot
Easy ggplot Q-Q plot	ggqq
Save a ggplot with specific defaults	ggSave
Print a heading	heading
Conditional returning of an object	ifelseObj
Insert numbered caption	insertFigureCaption insertNumberedCaption insertTableCaption
invertItems	invertItem invertItems
Identify outliers according to the IQR criterion	iqrOutlier
Visualising individual response patterns	irpplot
'NULL' and 'NA' 'proof' checking of whether something is a number	is.nr
Checking whether numbers are odd or even	is.even is.odd
More flexible version of isTRUE	isTrue
Wrapper for kableExtra for consistent 'ufs' table styling	kblXtra
knitAndSave	knitAndSave
Easily knit a custom figure fragment	knitFig
Title	makeScales
Converting many dataframe columns to numeric	massConvertToNumeric
A confidence interval for the mean	meanConfInt print.meanConfInt
Diamond plots	meansDiamondPlot
Diamond plot: means	meansDiamondPlotjmv
A diamond plot based on means, standard deviations, and sample sizes	meanSDtoDiamondPlot
Generate a table for multiple response questions	multiResponse
Multi Response	multiResponsejmv
Generate a table collapsing frequencies of multiple variables	multiVarFreq
normalHist	normalHist print.normalHist
Remove one or more zeroes before the decimal point	noZero
Options for the ufs package	get opts reset set
Split a dataset into two parallel halves	parallelSubscales print.parallelSubscales
The distribution of Omega Squared	domegaSq pomegaSq qomegaSq romegaSq
Estimate required sample size for accuracy in parameter estimation using bootES	pwr.bootES
Estimate required sample size for accuracy in parameter estimation of a proportion	pwr.confIntProp
Determine required sample size for a given confidence interval width for Pearson's r	pwr.confIntR
Power calculations for Omega Squared.	print.pwr.omegasq pwr.omegasq
Quietly update a package from a remote repository	quietGitLabUpdate quietRemotesInstall
Convenience function to quickly copy-paste a vector	qVec qVecSum
Bind lots of dataframes together rowwise	rbind_df_list
Simple alternative for rbind.fill or bind_rows	rbind_dfs
Detecting influential cases in regression analyses	print.regrInfluential regrInfluential
Repeat a string a number of times	repeatStr repStr
Output report from results	report report.default
Load a package, install if not available	safeRequire
scaleDiagnosis	knit_print.scaleDiagnosis print.scaleDiagnosis scaleDiagnosis scaleDiagnosis_partial
scaleStructure	knit_print.scaleStructure print.scaleStructure scaleReliability scaleStructure scaleStructurePartial scaleStructure_partial
scatterMatrix	print.scatterMatrix scatterMatrix
Set a knitr hook for caption numbering	setCaptionNumberingKnitrHook setFigCapNumbering setTabCapNumbering
sharedSubString	sharedSubString
Simulate a dataset	simDataSet
Spearman-Brown formula	spearmanBrown spearmanBrown_requiredLength spearmanBrown_reversed
Convert a string to a safe filename	strToFilename
Selects suspect participants from a 'carelessObject'	suspectParticipants
Test-Retest Alpha Coefficient	print.testRetestAlpha testRetestAlpha
Test-Retest Coefficient of Equivalence & Stability	print.testRetestCES testRetestCES
testRetestReliability	print.testRetestReliability testRetestReliability
testRetestSimData is a simulated dataframe used to demonstrate the testRetestAlpha coefficient function.	testRetestSimData
Easily parse a vector into a character value	vecTxt vecTxtB vecTxtM vecTxtQ
Convenience function to get 2-7 color viridis palettes	viridisPalette
Wrap all elements in a vector	wrapVector
Construct the URL for a Zotero export call	zotero_construct_export_call
Download and save all items in a public Zotero group	zotero_download_and_export_items
Get all items in a public Zotero group	zotero_get_all_items
Get number of items in a public Zotero group	zotero_nr_of_items

Package: ufs 0.5.12

ufs: A Collection of Utilities

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