Package: ttScreening 1.6

Meredith Ray

ttScreening: Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples

A screening process utilizing training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.

Authors:Meredith Ray, Xin Tong, Hongmei Zhang

ttScreening_1.6.tar.gz
ttScreening_1.6.tar.gz(r-4.5-noble)ttScreening_1.6.tar.gz(r-4.4-noble)
ttScreening_1.6.tgz(r-4.4-emscripten)ttScreening_1.6.tgz(r-4.3-emscripten)
ttScreening.pdf |ttScreening.html✨
ttScreening/json (API)

# Install 'ttScreening' in R:
install.packages('ttScreening', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.85 score 156 downloads 7 mentions 4 exports 69 dependencies

Last updated 6 years agofrom:cb412e7c5c. Checks:OK: 1 NOTE: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 10 2024
R-4.5-linuxNOTEDec 10 2024

Exports:irwsva.build2num.sv2sva2ttScreening

Dependencies:annotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscolorspacecorpcorcpp11crayoncurlDBIedgeRfastmapformatRfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomeInfoDbDatagluegridBasehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecyclelimmalocfitMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimenlmeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssfsmiscsimsalaparsnowstatmodsurvivalsvasysUCSC.utilsvctrsXMLxtableXVectorzlibbioc