Package: treefit 1.0.3
Kouhei Sutou
treefit: The First Software for Quantitative Trajectory Inference
Perform two types of analysis: 1) checking the goodness-of-fit of tree models to your single-cell gene expression data; and 2) deciding which tree best fits your data.
Authors:
treefit_1.0.3.tar.gz
treefit_1.0.3.tar.gz(r-4.5-noble)treefit_1.0.3.tar.gz(r-4.4-noble)
treefit_1.0.3.tgz(r-4.4-emscripten)treefit_1.0.3.tgz(r-4.3-emscripten)
treefit.pdf |treefit.html✨
treefit/json (API)
NEWS
| # Install 'treefit' in R: |
| install.packages('treefit', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hayamizu-lab/treefit-r/issues
Last updated 1 months agofrom:48e25e43bf. Checks:3 OK. Indexed: no.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 11 2025 |
| R-4.5-linux | OK | Mar 11 2025 |
| R-4.4-linux | OK | Mar 11 2025 |
Exports:generate_2d_n_arms_linked_star_datagenerate_2d_n_arms_star_datagenerate_n_arms_star_dataperturbate_knnperturbate_poissontreefit
Dependencies:clicolorspacecpp11fansifarverggplot2gluegtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkpillarpkgconfigpracmaR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Generate a 2-dimensional linked star tree data | generate_2d_n_arms_linked_star_data |
| Generate a 2-dimensional star tree data | generate_2d_n_arms_star_data |
| Generate a multi-dimensional star tree data | generate_n_arms_star_data |
| Generate perturbated expression by k-NN data | perturbate_knn |
| Generate perturbated counts by the Poisson distribution | perturbate_poisson |
| Plot estimated results | plot.treefit |
| Estimate the goodness-of-fit between tree models and data | treefit |
