| add_annotation | add_annotation |
| Add attribute to abject | add_attr |
| DEPRECATED. Adds a bar annotation layer to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | add_bar add_bar,InputHeatmap-method |
| Add class to abject | add_class |
| DEPRECATED. Adds a line annotation layer to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | add_line add_line,InputHeatmap-method |
| DEPRECATED. Adds a point annotation layer to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | add_point add_point,InputHeatmap-method |
| DEPRECATED. Adds a tile annotation layer to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | add_tile add_tile,InputHeatmap-method |
| annot_to_list | annot_to_list |
| Adds a bar annotation layer to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | annotation_bar annotation_bar,InputHeatmap-method |
| Adds a line annotation layer to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | annotation_line annotation_line,InputHeatmap-method |
| Adds a numeric annotation layer to an `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | annotation_numeric annotation_numeric,InputHeatmap-method |
| Adds a point annotation layer to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | annotation_point annotation_point,InputHeatmap-method |
| Adds a tile annotation layer to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | annotation_tile annotation_tile,InputHeatmap-method |
| Creates a `ComplexHeatmap` object for less standard plot manipulation (e.g. changing legend position) | as_ComplexHeatmap as_ComplexHeatmap,InputHeatmap-method |
| Get matrix from tibble | as_matrix |
| Check whether there are NA counts | check_if_counts_is_na |
| Check whether there are duplicated genes/transcripts | check_if_duplicated_genes |
| Check whether there are NA counts | check_if_wrong_input |
| Remove class to abject | drop_class |
| Check whether a numeric vector has been log transformed | error_if_log_transformed |
| Get column names either from user or from attributes | get_abundance_norm_if_exists |
| Get column names either from user or from attributes | get_elements |
| Get column names either from user or from attributes | get_elements_features |
| Get column names either from user or from attributes | get_elements_features_abundance |
| Get column names either from user or from attributes | get_sample_counts |
| Get column names either from user or from attributes | get_sample_transcript |
| Get column names either from user or from attributes | get_sample_transcript_counts |
| get_x_y_annotation_columns | get_x_y_annotation_columns |
| Creates a `InputHeatmap` object from `tbl_df` on evaluation creates a `ComplexHeatmap` | heatmap heatmap,tbl-method heatmap,tbl_df-method heatmap_ |
| This is a generalisation of ifelse that accepts an object and return an objects | ifelse_pipe |
| This is a generalisation of ifelse that accepts an object and return an objects | ifelse2_pipe |
| input_heatmap | input_heatmap |
| Adds a layers of symbols above the heatmap tiles to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | layer_arrow_down layer_arrow_down,InputHeatmap-method |
| Adds a layers of symbols above the heatmap tiles to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | layer_arrow_up layer_arrow_up,InputHeatmap-method |
| Adds a layer of symbols above the heatmap tiles to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | layer_asterisk layer_asterisk,InputHeatmap-method |
| Adds a layers of symbols above the heatmap tiles to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | layer_diamond layer_diamond,InputHeatmap-method |
| Adds a layers of symbols above the heatmap tiles to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | layer_point layer_point,InputHeatmap-method |
| Adds a layers of symbols above the heatmap tiles to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | layer_square layer_square,InputHeatmap-method |
| Adds a layer of symbols above the heatmap tiles to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | layer_star layer_star,InputHeatmap-method |
| Adds a layers of texts above the heatmap tiles to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap` | layer_text layer_text,InputHeatmap-method |
| Example data set N52 | N52 |
| .formula parser | parse_formula |
| Example data set Pasilla | pasilla |
| From rlang deprecated | prepend |
| Convert array of quosure (e.g. c(col_a, col_b)) into character vector | quo_names |
| Save plot on PDF file | save_pdf |
| save_pdf | save_pdf,Heatmap-method |
| save_pdf | save_pdf,InputHeatmap-method |
| Scale counts in a robust way against sd == 0 | scale_robust |
| Sub function of remove_redundancy_elements_though_reduced_dimensions | select_closest_pairs |
| Split the heatmap row-wise depending on the biggest branches in the cladogram. | split_columns split_columns,InputHeatmap-method split_rows split_rows,InputHeatmap-method |
| Wrap tidyHeatmap (ComplexHeatmap) in a patchwork-compliant patch | wrap_heatmap wrap_heatmap,InputHeatmap-method |
