Package: tReeTraits 0.1.2

Jeffery B. Cannon

tReeTraits: Calculate Tree Traits from Terrestrial Lidar

Measuring tree architecture from terrestrial lidar data, including tree-level properties, crown characteristics, and structural attributes derived from quantitative structure models (QSMs).

Authors:Jeffery B. Cannon [aut, cre]

tReeTraits_0.1.2.tar.gz
tReeTraits_0.1.2.tar.gz(r-4.7-any)tReeTraits_0.1.2.tar.gz(r-4.6-any)
tReeTraits_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tReeTraits/json (API)

# Install 'tReeTraits' in R:
install.packages('tReeTraits', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.70 score 1 scripts 182 downloads 37 exports 159 dependencies

Last updated from:8a8c666cfa. Checks:4 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK324
source / vignettesOK245
linux-release-x86_64OK328
wasm-releaseOK217

Exports:add_verticalitybasics_diagnostic_plotbranch_distribution_plotbranch_size_distributionbranch_volume_weighted_statsclean_lasconvex_hull_2Dfit_taper_Kozakfull_diagnostic_plotget_center_of_massget_com_offsetget_crown_baseget_crown_lever_armget_crown_volume_alphaget_crown_volume_voxelget_dbhget_heightget_lacunarityget_primary_branchesget_stem_tiltget_widthhull_diagnostic_plotinternode_distancesload_qsmnormalize_lasplot_qsm2dplot_qsm3dplot_treeqsm_volume_distributionrecenter_lasrotate_las_zrun_treeqsmsegment_crownsetup_pytlidartaper_diagnostic_plotvoxel_hull_2Dwrite_qsm

Dependencies:abindalphashape3dbackportsbase64encBHbitbit64bootbroombslibcachemcarcarDataclassclassIntclicliprcolorspaceconicfitcorrplotcowplotcpp11cppRoutingcrayonCrownScorchTLSdata.tableDBIDerivdigestdoBydplyre1071evaluatefarverfastmapFNNfontawesomeforecastFormulafracdifffsgeigengenericsgeometriesgeometryggplot2ggplotifyggpubrggrepelggsciggsignifgluegridExtragridGraphicsgtableherehighrhmshtmltoolshtmlwidgetsisobandjquerylibjsonliteKernSmoothknitrkriginglabelinglatticelazyevallidRlifecyclelinproglme4lmtestlpSolvemagicmagrittrMASSmathjaxrMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrnlmenloptrnnetnumDerivparallellypbkrtestpillarpkgconfigpngpolynompracmaprettyunitsprogressproxypurrrquantregR6randomForestRANNrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelRcppProgressRcppTOMLRdpackreadrrecexcavAARreformulasreticulateRfastrglrlangrlasrmarkdownrprojrootrstatixs2S7sassscalessfsfheadersspannerSparseMstarsstringistringrsurvivalterratibbletidyrtidyselecttimeDatetinytextzdbunitsurcautf8vctrsviridisLitevroomwithrwkxfunyamlyulab.utilsziggzoo

Readme and manuals

Help Manual

Help pageTopics
Read a PyTLidar QSM file.read_qsm_raw
Add point-wise verticality from local PCAadd_verticality
Diagnostic Plot of Basic Tree Measurementsbasics_diagnostic_plot
Diagnostic Plot of Branch Diameter Distributionbranch_distribution_plot
Get Branch size distribution from a QSMbranch_size_distribution
Calculate volume weighted branch statisticsbranch_volume_weighted_stats
Load, Recenter, and Remove low vegetation from `LAS` object representing segmented treeclean_las
Returns the convex hull representing vertical crown areaconvex_hull_2D
Fit taper equation to QSMfit_taper_Kozak
Generate a diagnostic plot to assess basic metrics and QSM outputfull_diagnostic_plot
Generate area estimates of tree profile in segmentsget_area_profile
Get center of mass from tree bole segments QSM (X, Y, Z)get_center_of_mass
Horizontal offset of center of mass from QSMget_com_offset
Estimate Crown base height of `LAS` representing segmented tree.get_crown_base
Calculate crown leverage from point cloudget_crown_lever_arm
Estimate crown volume by alpha shape volumeget_crown_volume_alpha
Estimate crown volume by voxelizationget_crown_volume_voxel
Extract diameter at breast height from `LAS` object representing segmented tree.get_dbh
Extract height from `LAS` object representing segmented tree.get_height
Calculate crown lacunarity from a tree crownget_lacunarity
Extract primary branches from a QSMget_primary_branches
Calculate tree sweep from straight line from QMSget_stem_sweep
Get tree tilt from QSMget_stem_tilt
Extract width from `LAS` object representing segmented tree.get_width
Diagnostic Plot of Crown Convex Hullshull_diagnostic_plot
Get internode distances between primary branches from a QSMinternode_distances
Load and Validate a QSM Fileload_qsm
Normalize `LAS` object representing segmented tree.normalize_las
Plot QSM in base Rplot_qsm2d
Plot QSM Cylinders in 3Dplot_qsm3d
Make 3-panel plot of tree point cloud to check for errorsplot_tree
Volume distribution from QSMqsm_volume_distribution
Recenter `LAS` object representing segmented tree based on the bole locationrecenter_las
Rotate `LAS` object about the `Z` axisrotate_las_z
Run TreeQSM on a LAS/LAZ file using PyTLidarrun_treeqsm
Segment tree crown of `LAS` representing segmented tree.segment_crown
Setup PyTLidar Python environmentsetup_pytlidar
Diagnostic Plot of Tree Tapertaper_diagnostic_plot
Returns an `sf`representing the vertical crown area from voxelizationvoxel_hull_2D
Save QSM results and patch parameterswrite_qsm