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Package: synlik 0.1.6

Matteo Fasiolo

synlik: Synthetic Likelihood Methods for Intractable Likelihoods

Framework to perform synthetic likelihood inference for models where the likelihood function is unavailable or intractable.

Authors:Matteo Fasiolo and Simon Wood

synlik_0.1.6.tar.gz
synlik_0.1.6.tar.gz(r-4.5-noble)synlik_0.1.6.tar.gz(r-4.4-noble)
synlik_0.1.6.tgz(r-4.4-emscripten)synlik_0.1.6.tgz(r-4.3-emscripten)
synlik.pdf |synlik.html✨
synlik/json (API)
NEWS

# Install 'synlik' in R:

install.packages('synlik', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mfasiolo/synlik_release/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3

Datasets:

bf1 - Nicholson's 1954 blowfly data
bf2 - Nicholson's 1954 blowfly data
bf3 - Nicholson's 1954 blowfly data
blow_sl - Blowfly model
blow_smcmc - Blowfly model
ricker_sl - Ricker model
ricker_smcmc - Ricker model

3.28 score 38 scripts 182 downloads 1 mentions 24 exports 4 dependencies

Last updated 2 years agofrom:cfa2c86cb2. Checks:OK: 1 NOTE: 1. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Nov 22 2024
R-4.5-linux-x86_64	NOTE	Nov 22 2024

Exports:blowC blowSimul blowStats checkBoundsCpp checkNorm cleanStats continue extractCorr nlar order_reg orderDist plot rickerSimul rickerStats robCov simpleModelsWrap simulate slacf slAcf slice slik slnlar smcmc synlik

Dependencies:lattice Matrix Rcpp RcppArmadillo

synlik_vignette

Rendered fromsynlik.Rmdusingknitr::docco_linearon Nov 22 2024.

Last update: 2021-05-25
Started: 2013-09-10

Citation

Readme and manuals

Help Manual

Help page	Topics
Synthetic Likelihood Methods for Intractable Likelihoods	synlik-package
Dummy class	ANYOrNULL-class
Nicholson's 1954 blowfly data	bf bf1 bf2 bf3
Blowfly model	blowStats blow_sl blow_smcmc
Simulates from the blowfly model	blowSimul
Checking the multivariate normal approximation.	checkNorm
Continuing estimation.	continue continue,smcmc-method
Extracting correlations from a covariance matrix	extractCorr
Dummy class	functionOrNULL-class
Internal C and C++ function	blowC checkBoundsCpp cleanStats internal_C order_reg simpleModelsWrap slacf slnlar
Estimate non-linear autoregressive coefficients	nlar
Dummy class	numericOrNULL-class
Summarize marginal distribution of (differenced) series.	orderDist
Plotting objects of class 'smcmc'.	plot,smcmc,missing-method plot-smcmc
Method for plotting an object of class 'synlik'.	plot,synlik,missing-method plot-synlik
Ricker model	rickerStats ricker_sl ricker_smcmc
Simulates from the ricker model	rickerSimul
Robust covariance matrix estimation	robCov
Simulate data or statistics from an object of class 'synlik'.	simulate,synlik-method
Estimate auto-covariances for multiple datasets.	slAcf
Plot slices of the synthetic log-likelihood.	slice
Evaluates the synthetic log-likelihood.	slik
MCMC parameter estimation for objects of class 'synlik'.	smcmc
'smcmc-class'	smcmc-class
'synlik-class'	synlik synlik-class