Package: symphony 0.1.1
symphony: Efficient and Precise Single-Cell Reference Atlas Mapping
Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.
Authors:
symphony_0.1.1.tar.gz
symphony_0.1.1.tar.gz(r-4.5-noble)symphony_0.1.1.tar.gz(r-4.4-noble)
symphony_0.1.1.tgz(r-4.4-emscripten)symphony_0.1.1.tgz(r-4.3-emscripten)
symphony.pdf |symphony.html✨
symphony/json (API)
# Install 'symphony' in R: |
install.packages('symphony', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- pbmcs_exprs_small - Log(CP10k+1) normalized counts matrix (genes by cells) for 10x PBMCs dataset for vignette.
- pbmcs_meta_small - Metadata for 10x PBMCs dataset for vignette.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:28b2a1af71. Checks:OK: 1 NOTE: 1. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 08 2024 |
R-4.5-linux-x86_64 | NOTE | Dec 08 2024 |
Exports:buildReferencebuildReferenceFromHarmonyObjcalcknncorrcalcknncorrWithinQuerycalcPerCellMappingMetriccalcPerClusterMappingMetricevaluatefindVariableGenesknnPredictmapQueryplotReferencerowSDsrunPCAQueryAlonescaleDataWithStatsvargenes_vst
Dependencies:BHclassclicolorspacecowplotcpp11data.tabledplyrdqrngfansifarverFNNgenericsggplot2gluegtableharmonyirlbaisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR6RANNRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppProgressRhpcBLASctlrlangRSpectrascalessitmostringistringrtibbletidyrtidyselectutf8uwotvctrsviridisLitewithr