Package: swfscDAS 0.6.3

Sam Woodman

swfscDAS: Processing DAS Data Files

Process and summarize DAS data files. These files are typically, but do not have to be DAS <https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-305.PDF> data produced by the Southwest Fisheries Science Center (SWFSC) program 'WinCruz'. This package standardizes and streamlines basic DAS data processing, and includes a PDF with the DAS data format requirements expected by the package.

Authors:Sam Woodman [aut, cre]

swfscDAS_0.6.3.tar.gz
swfscDAS_0.6.3.tar.gz(r-4.5-noble)swfscDAS_0.6.3.tar.gz(r-4.4-noble)
swfscDAS_0.6.3.tgz(r-4.4-emscripten)swfscDAS_0.6.3.tgz(r-4.3-emscripten)
swfscDAS.pdf |swfscDAS.html
swfscDAS/json (API)
NEWS

# Install 'swfscDAS' in R:
install.packages('swfscDAS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/swfsc/swfscdas/issues

Pkgdown:https://swfsc.github.io

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3

jagscpp

4.33 score 3 packages 24 scripts 289 downloads 24 exports 86 dependencies

Last updated 5 months agofrom:9c4210a9b3. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 01 2024
R-4.5-linuxOKDec 01 2024

Exports:.chop_condition_eff.chop_equallength_eff.dist_from_prev.process_chr.process_num.segdata_aggr.segdata_procas_das_dfas_das_dfrdas_checkdas_chop_conditiondas_chop_equallengthdas_chop_sectiondas_commentsdas_effortdas_effort_sightdas_format_pdfdas_intersects_stratadas_processdas_readdas_segdatadas_sightdistance_greatcirclerandpicks_convert

Dependencies:abindbitbit64classclassIntclicliprclueclustercodacolorspacecpp11crayonDBIdeldirdplyre1071fansifarverfBasicsgenericsggplot2ggrepelgluegssgtableHDIntervalhmsigraphisobandKernSmoothkknnlabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmodeestmunsellnlmepillarpkgconfigpolyclipprettyunitsprogressproxypurrrR6RColorBrewerRcppreadrrlangrmutilrpartrunjagss2scalessfspatialspatstat.dataspatstat.geomspatstat.univarspatstat.utilsstablestablediststatipstringistringrswfscMisctibbletidyrtidyselecttimechangetimeDatetimeSeriestzdbunitsutf8vctrsviridisLitevroomwithrwk

Joining DAS outputs with external data

Rendered fromDAS_data_join.Rmdusingknitr::rmarkdownon Dec 01 2024.

Last update: 2020-06-30
Started: 2020-06-30

Introduction to swfscDAS

Rendered fromswfscDAS.Rmdusingknitr::rmarkdownon Dec 01 2024.

Last update: 2024-07-04
Started: 2020-06-30

Readme and manuals

Help Manual

Help pageTopics
Southwest Fisheries Science Center DASswfscDAS-package swfscDAS
Coerce object to a das_df objectas_das_df as_das_df.das_df as_das_df.data.frame
Coerce object to a das_dfr objectas_das_dfr as_das_dfr.das_dfr as_das_dfr.data.frame
Check DAS filedas_check
Chop DAS data - conditiondas_chop_condition das_chop_condition.das_df das_chop_condition.data.frame
Chop DAS data - equal lengthdas_chop_equallength das_chop_equallength.das_df das_chop_equallength.data.frame
Chop DAS data - sectiondas_chop_section das_chop_section.das_df das_chop_section.data.frame
Extract comments from DAS datadas_comments das_comments.das_df das_comments.das_dfr das_comments.data.frame
'das_df' classdas_df das_df-class
'das_dfr' classdas_dfr das_dfr-class
Summarize DAS effortdas_effort das_effort.das_df das_effort.data.frame
Summarize DAS sightings by effort segmentdas_effort_sight
Split effort by stratadas_effort_strata das_effort_strata.das_df das_effort_strata.data.frame
DAS format requirementsdas_format_pdf
DAS strata - pointsdas_intersects_strata das_intersects_strata.data.frame das_intersects_strata.list
Process DAS datadas_process das_process.character das_process.das_dfr das_process.data.frame
Read DAS file(s)das_read
Summarize DAS data for a continuous effort sectiondas_segdata das_segdata.das_df das_segdata.data.frame
DAS sightingsdas_sight das_sight.das_df das_sight.data.frame
Calculate great-circle distancedistance_greatcircle
Convert randpicks filerandpicks_convert
Subsetting objects created using swfscDAS$<-.das_df $<-.das_dfr subsetting [.das_df [.das_dfr [<-.das_df [<-.das_dfr [[<-.das_df [[<-.das_dfr
Internal functions for swfscAirDAS.chop_condition_eff .chop_equallength_eff .dist_from_prev .process_chr .process_num .segdata_aggr .segdata_proc swfscAirDAS-internals