Package: swfscDAS 0.6.3
Sam Woodman
swfscDAS: Processing DAS Data Files
Process and summarize DAS data files. These files are typically, but do not have to be DAS <https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-305.PDF> data produced by the Southwest Fisheries Science Center (SWFSC) program 'WinCruz'. This package standardizes and streamlines basic DAS data processing, and includes a PDF with the DAS data format requirements expected by the package.
Authors:
swfscDAS_0.6.3.tar.gz
swfscDAS_0.6.3.tar.gz(r-4.5-noble)swfscDAS_0.6.3.tar.gz(r-4.4-noble)
swfscDAS_0.6.3.tgz(r-4.4-emscripten)swfscDAS_0.6.3.tgz(r-4.3-emscripten)
swfscDAS.pdf |swfscDAS.html✨
swfscDAS/json (API)
NEWS
| # Install 'swfscDAS' in R: |
| install.packages('swfscDAS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/swfsc/swfscdas/issues
Pkgdown site:https://swfsc.github.io
Last updated 6 months agofrom:9c4210a9b3. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 01 2024 |
| R-4.5-linux | OK | Dec 01 2024 |
Exports:.chop_condition_eff.chop_equallength_eff.dist_from_prev.process_chr.process_num.segdata_aggr.segdata_procas_das_dfas_das_dfrdas_checkdas_chop_conditiondas_chop_equallengthdas_chop_sectiondas_commentsdas_effortdas_effort_sightdas_format_pdfdas_intersects_stratadas_processdas_readdas_segdatadas_sightdistance_greatcirclerandpicks_convert
Dependencies:abindbitbit64classclassIntclicliprclueclustercodacolorspacecpp11crayonDBIdeldirdplyre1071fansifarverfBasicsgenericsggplot2ggrepelgluegssgtableHDIntervalhmsigraphisobandKernSmoothkknnlabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmodeestmunsellnlmepillarpkgconfigpolyclipprettyunitsprogressproxypurrrR6RColorBrewerRcppreadrrlangrmutilrpartrunjagss2scalessfspatialspatstat.dataspatstat.geomspatstat.univarspatstat.utilsstablestablediststatipstringistringrswfscMisctibbletidyrtidyselecttimechangetimeDatetimeSeriestzdbunitsutf8vctrsviridisLitevroomwithrwk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Southwest Fisheries Science Center DAS | swfscDAS-package swfscDAS |
| Coerce object to a das_df object | as_das_df as_das_df.das_df as_das_df.data.frame |
| Coerce object to a das_dfr object | as_das_dfr as_das_dfr.das_dfr as_das_dfr.data.frame |
| Check DAS file | das_check |
| Chop DAS data - condition | das_chop_condition das_chop_condition.das_df das_chop_condition.data.frame |
| Chop DAS data - equal length | das_chop_equallength das_chop_equallength.das_df das_chop_equallength.data.frame |
| Chop DAS data - section | das_chop_section das_chop_section.das_df das_chop_section.data.frame |
| Extract comments from DAS data | das_comments das_comments.das_df das_comments.das_dfr das_comments.data.frame |
| 'das_df' class | das_df das_df-class |
| 'das_dfr' class | das_dfr das_dfr-class |
| Summarize DAS effort | das_effort das_effort.das_df das_effort.data.frame |
| Summarize DAS sightings by effort segment | das_effort_sight |
| Split effort by strata | das_effort_strata das_effort_strata.das_df das_effort_strata.data.frame |
| DAS format requirements | das_format_pdf |
| DAS strata - points | das_intersects_strata das_intersects_strata.data.frame das_intersects_strata.list |
| Process DAS data | das_process das_process.character das_process.das_dfr das_process.data.frame |
| Read DAS file(s) | das_read |
| Summarize DAS data for a continuous effort section | das_segdata das_segdata.das_df das_segdata.data.frame |
| DAS sightings | das_sight das_sight.das_df das_sight.data.frame |
| Calculate great-circle distance | distance_greatcircle |
| Convert randpicks file | randpicks_convert |
| Subsetting objects created using swfscDAS | $<-.das_df $<-.das_dfr subsetting [.das_df [.das_dfr [<-.das_df [<-.das_dfr [[<-.das_df [[<-.das_dfr |
| Internal functions for swfscAirDAS | .chop_condition_eff .chop_equallength_eff .dist_from_prev .process_chr .process_num .segdata_aggr .segdata_proc swfscAirDAS-internals |
