This package is considered a duplicate. The official version of this package is found at:https://aidenlab.r-universe.dev/strawr
Package: strawr 0.0.92
Neva Cherniavsky Durand
strawr: Fast Implementation of Reading/Dump for .hic Files
API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).
Authors:
strawr_0.0.92.tar.gz
strawr_0.0.92.tar.gz(r-4.5-noble)strawr_0.0.92.tar.gz(r-4.4-noble)
strawr.pdf |strawr.html✨
strawr/json (API)
| # Install 'strawr' in R: |
| install.packages('strawr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/aidenlab/straw/issues
Uses libs:
Last updated 7 months agofrom:3b7236f264. Checks:2 OK. Indexed: no.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 13 2025 |
| R-4.5-linux-x86_64 | OK | Jan 13 2025 |
Exports:readHicBpResolutionsreadHicChromsreadHicNormTypesstraw
Dependencies:Rcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Function for reading basepair resolutions from .hic file | readHicBpResolutions |
| Function for reading chromosomes from .hic file | readHicChroms |
| Function for reading available normalizations from .hic file | readHicNormTypes |
| Straw Quick Dump | straw |
| strawr | strawr |
