Package: strawr 0.0.92

Neva Cherniavsky Durand

strawr: Fast Implementation of Reading/Dump for .hic Files

API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).

Authors:Neva Cherniavsky Durand [aut, cre], Muhammad Saad Shamim [aut], Aiden Lab [cph]

strawr_0.0.92.tar.gz
strawr_0.0.92.tar.gz(r-4.7-arm64)strawr_0.0.92.tar.gz(r-4.7-x86_64)strawr_0.0.92.tar.gz(r-4.6-arm64)strawr_0.0.92.tar.gz(r-4.6-x86_64)
strawr_0.0.92.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
strawr/json (API)

# Install 'strawr' in R:
install.packages('strawr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aidenlab/straw/issues

Uses libs:
  • curl– Easy-to-use client-side URL transfer library
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

curlzlibcpp

4.54 score 1 stars 14 packages 87 scripts 1.9k downloads 4 exports 1 dependencies

Last updated from:3b7236f264. Checks:6 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK113
linux-devel-x86_64OK105
source / vignettesOK200
linux-release-arm64OK114
linux-release-x86_64OK99
wasm-releaseOK122

Exports:readHicBpResolutionsreadHicChromsreadHicNormTypesstraw

Dependencies:Rcpp