Package: strawr 0.0.92
Neva Cherniavsky Durand
strawr: Fast Implementation of Reading/Dump for .hic Files
API for fast data extraction for .hic files that provides programmatic access to the matrices. It doesn't store the pointer data for all the matrices, only the one queried, and currently we are only supporting matrices (not vectors).
Authors:
strawr_0.0.92.tar.gz
strawr_0.0.92.zip(r-4.7-x86_64)strawr_0.0.92.zip(r-4.7-arm64)strawr_0.0.92.zip(r-4.6-x86_64)strawr_0.0.92.zip(r-4.6-arm64)
strawr_0.0.92.tar.gz(r-4.7-arm64)strawr_0.0.92.tar.gz(r-4.7-x86_64)strawr_0.0.92.tar.gz(r-4.6-arm64)strawr_0.0.92.tar.gz(r-4.6-x86_64)
strawr_0.0.92.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
strawr/json (API)
| # Install 'strawr' in R: |
| install.packages('strawr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/aidenlab/straw/issues
Last updated from:3b7236f264. Checks:10 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 78 | ||
| linux-devel-x86_64 | OK | 105 | ||
| source / vignettes | OK | 190 | ||
| linux-release-arm64 | OK | 81 | ||
| linux-release-x86_64 | OK | 147 | ||
| windows-devel-arm64 | OK | 229 | ||
| windows-devel-x86_64 | OK | 190 | ||
| windows-release-arm64 | OK | 220 | ||
| windows-release-x86_64 | OK | 163 | ||
| wasm-release | OK | 88 |
Exports:readHicBpResolutionsreadHicChromsreadHicNormTypesstraw
Dependencies:Rcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Function for reading basepair resolutions from .hic file | readHicBpResolutions |
| Function for reading chromosomes from .hic file | readHicChroms |
| Function for reading available normalizations from .hic file | readHicNormTypes |
| Straw Quick Dump | straw |
| strawr | strawr |