The statgenHTP Package | Data description | Example 1: photosystem efficiency in Arabidopsis | Data preparation | Data visualization | Layout plot | Raw data plot | Boxplot | Correlation plot | Outlier detection for single observations | Correction for spatial trends | Spatial model using SpATS | Model plots | Extracting model results | Outlier detection for series of observations | Modeling the genetic signal | Model fitting | Model prediction | Model plot | Estimation of parameters from time courses | References
This package is considered a duplicate. The official version of this package is found at:https://biometris.r-universe.dev/statgenHTP
Package: statgenHTP 1.0.9.3
Bart-Jan van Rossum
statgenHTP: High Throughput Phenotyping (HTP) Data Analysis
Phenotypic analysis of data coming from high throughput phenotyping (HTP) platforms, including different types of outlier detection, spatial analysis, and parameter estimation. The package is being developed within the EPPN2020 project (<https://cordis.europa.eu/project/id/731013>). Some functions have been created to be used in conjunction with the R package 'asreml' for the 'ASReml' software, which can be obtained upon purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r/>).
Authors:
statgenHTP_1.0.9.3.tar.gz
statgenHTP_1.0.9.3.tar.gz(r-4.7-any)statgenHTP_1.0.9.3.tar.gz(r-4.6-any)
statgenHTP_1.0.9.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
statgenHTP/json (API)
| # Install 'statgenHTP' in R: |
| install.packages('statgenHTP', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biometris/statgenhtp/issues
Datasets:
- noCorrectedRoot - Root data corrected for outliers for single observations.
- PhenoarchDat1 - Greenhouse data for a maize experiment in the PhenoArch platform.
- PhenovatorDat1 - Growth chamber data for an Arabidopsis experiment in the Phenovator platform.
- RootDat1 - Greenhouse data for an experiment in the RootPhAir platform.
- spatCorrectedArch - Maize data corrected for spatial trends.
- spatCorrectedVator - Arabidopsis data corrected for spatial trends.
- spatPredArch - Maize data, genotypic predictions.
Last updated from:f92508d027. Checks:4 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 263 | ||
| source / vignettes | OK | 243 | ||
| linux-release-x86_64 | OK | 272 | ||
| wasm-release | OK | 185 |
Exports:countValidcountValidPlotcreateTimePointsdetectSerieOutdetectSingleOutdetectSingleOutMaizeestimateSplineParametersfitModelsfitSplinefitSplineHDMgetCorrectedgetEffDimsgetGenoPredgetHeritgetTimePointsgetVarremoveSerieOutremoveSingleOutremoveTimePoints
Dependencies:animationbase64encclicpp11curldata.tabledotCall64farverfieldsgenericsggforceggnewscaleggplot2gluegridExtragtableisobandjsonlitelabelinglatticelifecycleLMMsolverlocfitlubridatemagickmagrittrmapsMASSMatrixpolyclipR6RColorBrewerRcpprlangS7scalesspamSpATSsystemfontstidyselecttimechangetweenrvctrsviridisLitewithr
