Package: statgenGWAS 1.0.10
statgenGWAS: Genome Wide Association Studies
Fast single trait Genome Wide Association Studies (GWAS) following the method described in Kang et al. (2010), <doi:10.1038/ng.548>. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.
Authors:
statgenGWAS_1.0.10.tar.gz
statgenGWAS_1.0.10.tar.gz(r-4.5-noble)statgenGWAS_1.0.10.tar.gz(r-4.4-noble)
statgenGWAS_1.0.10.tgz(r-4.4-emscripten)statgenGWAS_1.0.10.tgz(r-4.3-emscripten)
statgenGWAS.pdf |statgenGWAS.html✨
statgenGWAS/json (API)
NEWS
# Install 'statgenGWAS' in R: |
install.packages('statgenGWAS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biometris/statgengwas/issues
- dropsMap - DROPS data sets
- dropsMarkers - DROPS data sets
- dropsPheno - DROPS data sets
Last updated 20 days agofrom:446981db0e. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 25 2024 |
R-4.5-linux-x86_64 | OK | Nov 25 2024 |
Exports:codeMarkerscreateGDatakinshipreadPLINKrunSingleTraitGwas
Dependencies:clicolorspacecrayondata.tablefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppArmadilloRcppProgressrlangscalessommertibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Code and impute markers | codeMarkers |
DROPS data sets | dropsData dropsMap dropsMarkers dropsPheno |
S3 Class gData | createGData gData |
Functions for calculating kinship matrices | kinship |
Plot function for the class 'gData' | plot.gData |
Plot function for the class 'GWAS' | plot.GWAS |
Read PLINK binary data | readPLINK |
Perform single-trait GWAS | runSingleTraitGwas |
Summary function for the class 'gData' | summary.gData |
Summary function for the class 'GWAS' | summary.GWAS |