Package: st 1.2.7
Korbinian Strimmer
st: Shrinkage t Statistic and Correlation-Adjusted t-Score
Implements the "shrinkage t" statistic introduced in Opgen-Rhein and Strimmer (2007) <doi:10.2202/1544-6115.1252> and a shrinkage estimate of the "correlation-adjusted t-score" (CAT score) described in Zuber and Strimmer (2009) <doi:10.1093/bioinformatics/btp460>. It also offers a convenient interface to a number of other regularized t-statistics commonly employed in high-dimensional case-control studies.
Authors:
st_1.2.7.tar.gz
st_1.2.7.tar.gz(r-4.5-noble)st_1.2.7.tar.gz(r-4.4-noble)
st_1.2.7.tgz(r-4.4-emscripten)st_1.2.7.tgz(r-4.3-emscripten)
st.pdf |st.html✨
st/json (API)
NEWS
| # Install 'st' in R: |
| install.packages('st', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/strimmerlab/software/issues
- choe2.L - A Subset of the Choe et al. (2005) "Golden Spike" Experiment
- choe2.degenes - A Subset of the Choe et al. (2005) "Golden Spike" Experiment
- choe2.mapping - A Subset of the Choe et al. (2005) "Golden Spike" Experiment
- choe2.mat - A Subset of the Choe et al. (2005) "Golden Spike" Experiment
- choe2.probe.name - A Subset of the Choe et al. (2005) "Golden Spike" Experiment
- choe2.symbol.name - A Subset of the Choe et al. (2005) "Golden Spike" Experiment
Last updated 3 years agofrom:f1bfd26b07. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 13 2024 |
| R-4.5-linux | OK | Dec 13 2024 |
Exports:cst.funcst.statdiffmean.fundiffmean.statefront.funefront.statlai.tscorelait.funlait.statmodt.funmodt.statrankprod.funrankprod.statsam.funsam.statsamL1.funsamL1.statshrinkcat.funshrinkcat.statshrinkt.funshrinkt.statstudentt.funstudentt.stat
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The st package | st-package |
| A Subset of the Choe et al. (2005) ``Golden Spike'' Experiment | choe2.degenes choe2.L choe2.mapping choe2.mat choe2.probe.name choe2.symbol.name |
| Correlation-Shared t-Statistic | cst.fun cst.stat |
| Difference of Means (``Fold Change'') and Rank Products Statistic | diffmean.fun diffmean.stat rankprod.fun rankprod.stat |
| Correlation-Predicted t-Statistic | lai.tscore lait.fun lait.stat |
| Various (Regularized) t Statistics | efront.fun efront.stat modt.fun modt.stat sam.fun sam.stat samL1.fun samL1.stat |
| Correlation-Adjusted t Score (CAT score) | shrinkcat.fun shrinkcat.stat |
| The Shrinkage t Statistic | shrinkt.fun shrinkt.stat |
| (Paired) Student t Statistic | studentt.fun studentt.stat |