Package: sprex 1.4.1

Eric Archer

sprex: Calculate Species Richness and Extrapolation Metrics

Calculate species richness functions for rarefaction and extrapolation.

Authors:Eric Archer [aut, cre]

sprex_1.4.1.tar.gz
sprex_1.4.1.tar.gz(r-4.5-noble)sprex_1.4.1.tar.gz(r-4.4-noble)
sprex_1.4.1.tgz(r-4.4-emscripten)sprex_1.4.1.tgz(r-4.3-emscripten)
sprex.pdf |sprex.html✨
sprex/json (API)

# Install 'sprex' in R:
install.packages('sprex', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ericarcher/sprex/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:

jagscpp

1.70 score 10 scripts 161 downloads 18 exports 74 dependencies

Last updated 9 years agofrom:8c9148a19a. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 28 2024
R-4.5-linuxOKDec 28 2024

Exports:.s.ind.n.mACEbootstrap.assemblageChao1Clenchdiscovery.curveexpand.freqsexpected.num.speciesf.statsiChao1jack1jack2num.samples.requiredplot.discovery.curverarefaction.overlapsample.to.species.freqspecies.to.sample.freqSwor1

Dependencies:abindclassclassIntcliclueclustercodacolorspacecpp11DBIdeldirdplyre1071fansifarverfBasicsgenericsggplot2ggrepelgluegssgtableHDIntervaligraphisobandKernSmoothkknnlabelinglatticelifecyclemagrittrMASSMatrixmgcvmodeestmunsellnlmepillarpkgconfigpolyclipproxypurrrR6RColorBrewerRcpprlangrmutilrpartrunjagss2scalessfspatialspatstat.dataspatstat.geomspatstat.univarspatstat.utilsstablestablediststatipstringistringrswfscMisctibbletidyrtidyselecttimeDatetimeSeriesunitsutf8vctrsviridisLitewithrwk

Readme and manuals

Help Manual

Help pageTopics
Calculate species richness and extrapolation metricssprex-package sprex
Number of Unobserved SpeciesACE Chao1 Clench f0 iChao1 jack1 jack2 Swor1
Bootstrap Assemblage of Speciesbootstrap.assemblage
Discovery Curvediscovery.curve
Expand Frequency Matrixexpand.freqs
Expected Number of Speciesexpected.num.species
Frequency Vector Statisticsf.stats
Number of Samples Requirednum.samples.required
Osa beetle species countsosa.old.growth osa.second.growth
Plot a Discovery Curveplot.discovery.curve
Rarefaction Overlaprarefaction.overlap
Create Vector of Species Frequenciessample.to.species.freq
Create Vector of Sample Frequenciesspecies.to.sample.freq