Package: sparsevb 0.1.1

Gabriel Clara

sparsevb: Spike-and-Slab Variational Bayes for Linear and Logistic Regression

Implements variational Bayesian algorithms to perform scalable variable selection for sparse, high-dimensional linear and logistic regression models. Features include a novel prioritized updating scheme, which uses a preliminary estimator of the variational means during initialization to generate an updating order prioritizing large, more relevant, coefficients. Sparsity is induced via spike-and-slab priors with either Laplace or Gaussian slabs. By default, the heavier-tailed Laplace density is used. Formal derivations of the algorithms and asymptotic consistency results may be found in Kolyan Ray and Botond Szabo (JASA 2020) and Kolyan Ray, Botond Szabo, and Gabriel Clara (NeurIPS 2020).

Authors:Gabriel Clara [aut, cre], Botond Szabo [aut], Kolyan Ray [aut]

sparsevb_0.1.1.tar.gz
sparsevb_0.1.1.tar.gz(r-4.7-arm64)sparsevb_0.1.1.tar.gz(r-4.7-x86_64)sparsevb_0.1.1.tar.gz(r-4.6-arm64)sparsevb_0.1.1.tar.gz(r-4.6-x86_64)
sparsevb_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
sparsevb/json (API)

# Install 'sparsevb' in R:
install.packages('sparsevb', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://gitlab.com/gclara/varpack

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

openblascppopenmp

1.11 score 13 scripts 254 downloads 1 exports 18 dependencies

Last updated from:eb538d4b3a. Checks:6 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK183
linux-devel-x86_64OK146
source / vignettesOK191
linux-release-arm64OK187
linux-release-x86_64OK142
wasm-releaseOK122

Exports:svb.fit

Dependencies:adaptMCMCcodacodetoolsforeachglmnetintervalsiteratorslatticeMASSMatrixramcmcRcppRcppArmadilloRcppEigenRcppEnsmallenselectiveInferenceshapesurvival