Package: sparkhail 0.1.1
Samuel Macêdo
sparkhail: A 'Sparklyr' Extension for 'Hail'
'Hail' is an open-source, general-purpose, 'python' based data analysis tool with additional data types and methods for working with genomic data, see <https://hail.is/>. 'Hail' is built to scale and has first-class support for multi-dimensional structured data, like the genomic data in a genome-wide association study (GWAS). 'Hail' is exposed as a 'python' library, using primitives for distributed queries and linear algebra implemented in 'scala', 'spark', and increasingly 'C++'. The 'sparkhail' is an R extension using 'sparklyr' package. The idea is to help R users to use 'hail' functionalities with the well-know 'tidyverse' syntax, see <https://www.tidyverse.org/>.
Authors:
sparkhail_0.1.1.tar.gz
sparkhail_0.1.1.tar.gz(r-4.5-noble)sparkhail_0.1.1.tar.gz(r-4.4-noble)
sparkhail_0.1.1.tgz(r-4.4-emscripten)sparkhail_0.1.1.tgz(r-4.3-emscripten)
sparkhail.pdf |sparkhail.html✨
sparkhail/json (API)
| # Install 'sparkhail' in R: |
| install.packages('sparkhail', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 years agofrom:d398df009d. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 11 2024 |
| R-4.5-linux | OK | Nov 11 2024 |
Exports:hail_confighail_contexthail_dataframehail_describehail_entrieshail_get_1kghail_idshail_installhail_read_matrixhail_uninstallmt_col_fieldsmt_col_keymt_entry_fieldsmt_globals_fieldsmt_row_fieldsmt_row_keymt_str_rows
Dependencies:askpassbase64encblobbslibcachemclicodetoolscommonmarkconfigcpp11crayoncurlDBIdbplyrdigestdplyrevaluatefansifastmapfontawesomefsgenericsglobalsgluehighrhtmltoolshtmlwidgetshttpuvhttrjquerylibjsonliteknitrlaterlifecyclelistviewermagrittrmemoisemimeopensslpillarpkgconfigpromisespurrrR6rappdirsRcpprlangrmarkdownrstudioapisassshinysourcetoolssparklyrsparklyr.nestedstringistringrsystibbletidyrtidyselecttinytexutf8uuidvctrswithrxfunxml2xtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Read Hail Configuration | hail_config |
| Create Hail Context | hail_context |
| Create a Dataframe | hail_dataframe |
| Describe a MatrixTable | hail_describe mt_col_fields mt_col_key mt_entry_fields mt_globals_fields mt_row_fields mt_row_key mt_str_rows |
| Get Entries Field | hail_entries |
| Download the Dataset Examples | hail_get_1kg |
| Get Sample Ids | hail_ids |
| Install Hail and Datasets | hail_install hail_uninstall |
| Read a MatrixTable | hail_read_matrix |