Package: sparkhail 0.1.1

Samuel Macêdo

sparkhail: A 'Sparklyr' Extension for 'Hail'

'Hail' is an open-source, general-purpose, 'python' based data analysis tool with additional data types and methods for working with genomic data, see <https://hail.is/>. 'Hail' is built to scale and has first-class support for multi-dimensional structured data, like the genomic data in a genome-wide association study (GWAS). 'Hail' is exposed as a 'python' library, using primitives for distributed queries and linear algebra implemented in 'scala', 'spark', and increasingly 'C++'. The 'sparkhail' is an R extension using 'sparklyr' package. The idea is to help R users to use 'hail' functionalities with the well-know 'tidyverse' syntax, see <https://www.tidyverse.org/>.

Authors:Samuel Macêdo [aut, cre], Javier Luraschi [aut], Michael Lawrence [ctb]

sparkhail_0.1.1.tar.gz
sparkhail_0.1.1.tar.gz(r-4.5-noble)sparkhail_0.1.1.tar.gz(r-4.4-noble)
sparkhail_0.1.1.tgz(r-4.4-emscripten)sparkhail_0.1.1.tgz(r-4.3-emscripten)
sparkhail.pdf |sparkhail.html
sparkhail/json (API)

# Install 'sparkhail' in R:
install.packages('sparkhail', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

17 exports 0.00 score 69 dependencies 9 scripts 156 downloads

Last updated 5 years agofrom:d398df009d. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 12 2024
R-4.5-linuxOKSep 12 2024

Exports:hail_confighail_contexthail_dataframehail_describehail_entrieshail_get_1kghail_idshail_installhail_read_matrixhail_uninstallmt_col_fieldsmt_col_keymt_entry_fieldsmt_globals_fieldsmt_row_fieldsmt_row_keymt_str_rows

Dependencies:askpassbase64encblobbslibcachemclicodetoolscommonmarkconfigcpp11crayoncurlDBIdbplyrdigestdplyrevaluatefansifastmapfontawesomefsgenericsglobalsgluehighrhtmltoolshtmlwidgetshttpuvhttrjquerylibjsonliteknitrlaterlifecyclelistviewermagrittrmemoisemimeopensslpillarpkgconfigpromisespurrrR6rappdirsRcpprlangrmarkdownrstudioapisassshinysourcetoolssparklyrsparklyr.nestedstringistringrsystibbletidyrtidyselecttinytexutf8uuidvctrswithrxfunxml2xtableyaml

Readme and manuals

Help Manual

Help pageTopics
Read Hail Configurationhail_config
Create Hail Contexthail_context
Create a Dataframehail_dataframe
Describe a MatrixTablehail_describe mt_col_fields mt_col_key mt_entry_fields mt_globals_fields mt_row_fields mt_row_key mt_str_rows
Get Entries Fieldhail_entries
Download the Dataset Exampleshail_get_1kg
Get Sample Idshail_ids
Install Hail and Datasetshail_install hail_uninstall
Read a MatrixTablehail_read_matrix