Package: spOccupancy 0.7.6
spOccupancy: Single-Species, Multi-Species, and Integrated Spatial Occupancy Models
Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2022) <doi:10.18637/jss.v103.i05>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively.
Authors:
spOccupancy_0.7.6.tar.gz
spOccupancy_0.7.6.tar.gz(r-4.5-noble)spOccupancy_0.7.6.tar.gz(r-4.4-noble)
spOccupancy_0.7.6.tgz(r-4.4-emscripten)spOccupancy_0.7.6.tgz(r-4.3-emscripten)
spOccupancy.pdf |spOccupancy.html✨
spOccupancy/json (API)
NEWS
# Install 'spOccupancy' in R: |
install.packages('spOccupancy', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/doserjef/spoccupancy/issues
Pkgdown:https://www.jeffdoser.com
- hbef2015 - Detection-nondetection data of 12 foliage gleaning bird species in 2015 in the Hubbard Brook Experimental Forest
- hbefElev - Elevation in meters extracted at a 30m resolution across the Hubbard Brook Experimental Forest
- hbefTrends - Detection-nondetection data of 12 foliage gleaning bird species from 2010-2018 in the Hubbard Brook Experimental Forest
- neon2015 - Detection-nondetection data of 12 foliage gleaning bird species in 2015 in Bartlett Experimental Forest in New Hampshire, USA
Last updated 8 months agofrom:cf0ef6e5ad. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 16 2024 |
R-4.5-linux-x86_64 | OK | Nov 16 2024 |
Exports:getSVCSamplesintMsPGOccintPGOcclfJSDMlfMsPGOccmsPGOccPGOccpostHocLMppcOccsfJSDMsfMsPGOccsimBinomsimIntMsOccsimIntOccsimMsOccsimOccsimTBinomsimTMsOccsimTOccspIntPGOccspMsPGOccspPGOccstMsPGOccstPGOccsvcMsPGOccsvcPGBinomsvcPGOccsvcTMsPGOccsvcTPGBinomsvcTPGOcctMsPGOcctPGOccupdateMCMCwaicOcc
Dependencies:abindbootcodacodetoolsdoParallelforeachiteratorslatticelme4MASSMatrixminqanlmenloptrRANNRcppRcppEigenspAbundance