Package: spAbundance 0.2.1
spAbundance: Univariate and Multivariate Spatial Modeling of Species Abundance
Fits single-species (univariate) and multi-species (multivariate) non-spatial and spatial abundance models in a Bayesian framework using Markov Chain Monte Carlo (MCMC). Spatial models are fit using Nearest Neighbor Gaussian Processes (NNGPs). Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2022) <doi:10.18637/jss.v103.i05>. Fits single-species and multi-species spatial and non-spatial versions of generalized linear mixed models (Gaussian, Poisson, Negative Binomial), N-mixture models (Royle 2004 <doi:10.1111/j.0006-341X.2004.00142.x>) and hierarchical distance sampling models (Royle, Dawson, Bates (2004) <doi:10.1890/03-3127>). Multi-species spatial models are fit using a spatial factor modeling approach with NNGPs for computational efficiency.
Authors:
spAbundance_0.2.1.tar.gz
spAbundance_0.2.1.tar.gz(r-4.5-noble)spAbundance_0.2.1.tar.gz(r-4.4-noble)
spAbundance_0.2.1.tgz(r-4.4-emscripten)spAbundance_0.2.1.tgz(r-4.3-emscripten)
spAbundance.pdf |spAbundance.html✨
spAbundance/json (API)
NEWS
# Install 'spAbundance' in R: |
install.packages('spAbundance', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biodiverse/spabundance/issues
Pkgdown:https://www.doserlab.com
- bbsData - Count data for six warbler species in Pennsylvania, USA
- bbsPredData - Covariates and coordinates for prediction of relative warbler abundance in Pennsylvania, USA
- dataNMixSim - Simulated repeated count data of 6 species across 225 sites
- hbefCount2015 - Count data of 12 foliage gleaning bird species in 2015 in the Hubbard Brook Experimental Forest
- neonDWP - Distance sampling data of 16 bird species observed in the Disney Wilderness Preserve in 2018 in Florida, USA
- neonPredData - Land cover covariates and coordinates at a 1ha resolution across Disney Wilderness Preserve
Last updated 2 months agofrom:5e1f616a02. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 05 2024 |
R-4.5-linux-x86_64 | OK | Dec 05 2024 |
Exports:abundDSlfMsAbundlfMsDSlfMsNMixmsAbundmsDSmsNMixNMixppcAbundsfMsAbundsfMsDSsfMsNMixsimAbundsimDSsimMsAbundsimMsDSsimMsNMixsimNMixspAbundspDSspNMixsvcAbundsvcMsAbundwaicAbund
Dependencies:abindbootcodacodetoolsdoParallelforeachiteratorslatticelme4MASSMatrixminqanlmenloptrRANNRcppRcppEigen