Package: soptdmaeA 1.0.0

Dibaba Bayisa Gemechu

soptdmaeA: Sequential Optimal Designs for Two-Colour cDNA Microarray Experiments

Computes sequential A-, MV-, D- and E-optimal or near-optimal block and row-column designs for two-colour cDNA microarray experiments using the linear fixed effects and mixed effects models where the interest is in a comparison of all possible elementary treatment contrasts. The package also provides an optional method of using the graphical user interface (GUI) R package 'tcltk' to ensure that it is user friendly.

Authors:Dibaba Bayisa Gemechu, Legesse Kassa Debusho, and Linda Haines

soptdmaeA_1.0.0.tar.gz
soptdmaeA_1.0.0.tar.gz(r-4.5-noble)soptdmaeA_1.0.0.tar.gz(r-4.4-noble)
soptdmaeA_1.0.0.tgz(r-4.4-emscripten)soptdmaeA_1.0.0.tgz(r-4.3-emscripten)
soptdmaeA.pdf |soptdmaeA.html✨
soptdmaeA/json (API)

# Install 'soptdmaeA' in R:
install.packages('soptdmaeA', repos = 'https://cloud.r-project.org')

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 149 downloads 13 exports 12 dependencies

Last updated 8 years agofrom:81a9a94807. Checks:2 OK, 1 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 19 2025
R-4.5-linuxNOTEMar 19 2025
R-4.4-linuxOKMar 19 2025

Exports:cmatbrcd.maefixparsoptd.maegraphsoptd.maemmenusoptd.maeprint.soptdmaeAprint.summary.soptdmaeAseqAoptbrcd.maeAseqDoptbrcd.maeAseqEoptbrcd.maeAseqMVoptbrcd.maeAsoptdmaeAsoptdmaeA.defaultsummary.soptdmaeA

Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMASSMatrixpkgconfigrlangvctrs

Citation

To cite package ‘soptdmaeA’ in publications use:

Gemechu DB, Debusho LK, Haines L (2017). soptdmaeA: Sequential Optimal Designs for Two-Colour cDNA Microarray Experiments. R package version 1.0.0, https://CRAN.R-project.org/package=soptdmaeA.

ATTENTION: This citation information has been auto-generated from the package DESCRIPTION file and may need manual editing, see ‘help("citation")’.

Corresponding BibTeX entry: 

  @Manual{,
    title = {soptdmaeA: Sequential Optimal Designs for Two-Colour cDNA
      Microarray Experiments},
    author = {Dibaba Bayisa Gemechu and Legesse Kassa Debusho and Linda
      Haines},
    year = {2017},
    note = {R package version 1.0.0},
    url = {https://CRAN.R-project.org/package=soptdmaeA},
  }

Readme and manuals

Help Manual

Help pageTopics
Computes the treatment information matrixcmatbrcd.mae
Sets parametric values and initial designfixparsoptd.mae
Creates the graphical layout of resultant sequential optimal designgraphsoptd.mae
Creates the main menu tcltk windowmmenusoptd.mae
Sequential optimal designs for two-colour cDNA microarray experimentsprint.soptdmaeA print.summary.soptdmaeA soptdmaeA soptdmaeA.default summary.soptdmaeA
Internal functionsseqAoptbrcd.maeA seqDoptbrcd.maeA seqEoptbrcd.maeA seqMVoptbrcd.maeA soptdmaeA-internal