Package: smfishHmrf 0.1
Qian Zhu
smfishHmrf: Hidden Markov Random Field for Spatial Transcriptomic Data
Discovery of spatial patterns with Hidden Markov Random Field. This package is designed for spatial transcriptomic data and single molecule fluorescent in situ hybridization (FISH) data such as sequential fluorescence in situ hybridization (seqFISH) and multiplexed error-robust fluorescence in situ hybridization (MERFISH). The methods implemented in this package are described in Zhu et al. (2018) <doi:10.1038/nbt.4260>.
Authors:
smfishHmrf_0.1.tar.gz
smfishHmrf_0.1.tar.gz(r-4.5-noble)smfishHmrf_0.1.tar.gz(r-4.4-noble)
smfishHmrf_0.1.tgz(r-4.4-emscripten)smfishHmrf_0.1.tgz(r-4.3-emscripten)
smfishHmrf.pdf |smfishHmrf.html✨
smfishHmrf/json (API)
| # Install 'smfishHmrf' in R: |
| install.packages('smfishHmrf', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://bitbucket.org/qzhudfci/smfishhmrf-r
- seqfishplus - SeqFISHplus dataset
Last updated 4 years agofrom:41aae463be. Checks:3 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 11 2025 |
| R-4.5-linux-x86_64 | OK | Mar 11 2025 |
| R-4.4-linux-x86_64 | OK | Mar 11 2025 |
Exports:findDampFactorsmfishHmrf.generate.centroidsmfishHmrf.generate.centroid.itsmfishHmrf.generate.centroid.savesmfishHmrf.generate.centroid.use.existsmfishHmrf.hmrfem.multismfishHmrf.hmrfem.multi.itsmfishHmrf.hmrfem.multi.it.minsmfishHmrf.hmrfem.multi.savesmfishHmrf.read.expression
