Package: smfishHmrf 0.1

Qian Zhu

smfishHmrf: Hidden Markov Random Field for Spatial Transcriptomic Data

Discovery of spatial patterns with Hidden Markov Random Field. This package is designed for spatial transcriptomic data and single molecule fluorescent in situ hybridization (FISH) data such as sequential fluorescence in situ hybridization (seqFISH) and multiplexed error-robust fluorescence in situ hybridization (MERFISH). The methods implemented in this package are described in Zhu et al. (2018) <doi:10.1038/nbt.4260>.

Authors:Qian Zhu and Guo-Cheng Yuan

smfishHmrf_0.1.tar.gz
smfishHmrf_0.1.tar.gz(r-4.5-noble)smfishHmrf_0.1.tar.gz(r-4.4-noble)
smfishHmrf_0.1.tgz(r-4.4-emscripten)smfishHmrf_0.1.tgz(r-4.3-emscripten)
smfishHmrf.pdf |smfishHmrf.html✨
smfishHmrf/json (API)

Peer review:

Bug tracker:https://bitbucket.org/qzhudfci/smfishhmrf-r

10 exports 0.00 score 4 dependencies 17 scripts 136 downloads

Last updated 4 years agofrom:41aae463be. Checks:OK: 2. Indexed: yes.

Exports:findDampFactorsmfishHmrf.generate.centroidsmfishHmrf.generate.centroid.itsmfishHmrf.generate.centroid.savesmfishHmrf.generate.centroid.use.existsmfishHmrf.hmrfem.multismfishHmrf.hmrfem.multi.itsmfishHmrf.hmrfem.multi.it.minsmfishHmrf.hmrfem.multi.savesmfishHmrf.read.expression

Dependencies:fspracmarbibutilsRdpack