Package: smfishHmrf 0.1

Qian Zhu

smfishHmrf: Hidden Markov Random Field for Spatial Transcriptomic Data

Discovery of spatial patterns with Hidden Markov Random Field. This package is designed for spatial transcriptomic data and single molecule fluorescent in situ hybridization (FISH) data such as sequential fluorescence in situ hybridization (seqFISH) and multiplexed error-robust fluorescence in situ hybridization (MERFISH). The methods implemented in this package are described in Zhu et al. (2018) <doi:10.1038/nbt.4260>.

Authors:Qian Zhu and Guo-Cheng Yuan

smfishHmrf_0.1.tar.gz
smfishHmrf_0.1.zip(r-4.7-x86_64)smfishHmrf_0.1.zip(r-4.7-arm64)smfishHmrf_0.1.zip(r-4.6-x86_64)smfishHmrf_0.1.zip(r-4.6-arm64)
smfishHmrf_0.1.tar.gz(r-4.7-arm64)smfishHmrf_0.1.tar.gz(r-4.7-x86_64)smfishHmrf_0.1.tar.gz(r-4.6-arm64)smfishHmrf_0.1.tar.gz(r-4.6-x86_64)
smfishHmrf_0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
smfishHmrf/json (API)

# Install 'smfishHmrf' in R:
install.packages('smfishHmrf', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://bitbucket.org/qzhudfci/smfishhmrf-r

Datasets:

On CRAN:

Conda:

2.04 score 22 scripts 291 downloads 10 exports 4 dependencies

Last updated from:41aae463be. Checks:10 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK122
linux-devel-x86_64OK91
source / vignettesOK170
linux-release-arm64OK83
linux-release-x86_64OK91
windows-devel-arm64OK222
windows-devel-x86_64OK112
windows-release-arm64OK176
windows-release-x86_64OK98
wasm-releaseOK98

Exports:findDampFactorsmfishHmrf.generate.centroidsmfishHmrf.generate.centroid.itsmfishHmrf.generate.centroid.savesmfishHmrf.generate.centroid.use.existsmfishHmrf.hmrfem.multismfishHmrf.hmrfem.multi.itsmfishHmrf.hmrfem.multi.it.minsmfishHmrf.hmrfem.multi.savesmfishHmrf.read.expression

Dependencies:fspracmarbibutilsRdpack