Package: simmr 0.5.1.217
Emma Govan
simmr: A Stable Isotope Mixing Model
Fits Stable Isotope Mixing Models (SIMMs) and is meant as a longer term replacement to the previous widely-used package SIAR. SIMMs are used to infer dietary proportions of organisms consuming various food sources from observations on the stable isotope values taken from the organisms' tissue samples. However SIMMs can also be used in other scenarios, such as in sediment mixing or the composition of fatty acids. The main functions are simmr_load() and simmr_mcmc(). The two vignettes contain a quick start and a full listing of all the features. The methods used are detailed in the papers Parnell et al 2010 <doi:10.1371/journal.pone.0009672>, and Parnell et al 2013 <doi:10.1002/env.2221>.
Authors:
simmr_0.5.1.217.tar.gz
simmr_0.5.1.217.tar.gz(r-4.5-noble)simmr_0.5.1.217.tar.gz(r-4.4-noble)
simmr_0.5.1.217.tgz(r-4.4-emscripten)simmr_0.5.1.217.tgz(r-4.3-emscripten)
simmr.pdf |simmr.html✨
simmr/json (API)
NEWS
| # Install 'simmr' in R: |
| install.packages('simmr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/andrewcparnell/simmr/issues
- geese_data - Geese stable isotope mixing data set
- geese_data_day1 - A smaller version of the Geese stable isotope mixing data set
- simmr_data_1 - A simple fake stable isotope mixing data set
- simmr_data_2 - A 3-isotope fake stable isotope mixing data set
- square_data - An artificial data set used to indicate effect of priors
Last updated 7 days agofrom:2c11f16e0b. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 17 2024 |
| R-4.5-linux-x86_64 | OK | Oct 17 2024 |
Exports:combine_sourcescompare_groupscompare_sourcesposterior_predictiveprior_vizsimmr_elicitsimmr_ffvbsimmr_loadsimmr_mcmc
Dependencies:abindbackportsbayesmbayesplotbootcheckmateclicodacolorspacecompositionscpp11crayonDEoptimRdistributionaldplyrfansifarverforcatsgenericsGGallyggplot2ggridgesggstatsgluegridExtragtablehmsisobandlabelinglatticelifecyclemagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivpatchworkpillarpkgconfigplyrposteriorprettyunitsprogresspurrrR2jagsR2WinBUGSR6RColorBrewerRcppRcppArmadilloRcppDistreshape2rjagsrlangrobustbasescalesstringistringrtensorAtibbletidyrtidyselectutf8vctrsviridisviridisLitewithr
simmr: advanced plotting guide
Rendered fromadvanced_plotting.Rmdusingknitr::rmarkdownon Oct 17 2024.Last update: 2023-10-13
Started: 2023-03-25
simmr: quick start guide
Rendered fromquick_start.Rmdusingknitr::rmarkdownon Oct 17 2024.Last update: 2023-10-02
Started: 2019-06-14
Stable Isotope Mixing Models in R with simmr
Rendered fromsimmr.Rmdusingknitr::rmarkdownon Oct 17 2024.Last update: 2024-10-16
Started: 2015-08-06
