Package: sharpr2 1.1.1.0

Liang He

sharpr2: Estimating Regulatory Scores and Identifying ATAC-STARR Data

An algorithm for identifying high-resolution driver elements for datasets from a high-definition reporter assay library. Xinchen Wang, Liang He, Sarah Goggin, Alham Saadat, Li Wang, Melina Claussnitzer, Manolis Kellis (2017) <doi:10.1101/193136>.

Authors:Liang He

sharpr2_1.1.1.0.tar.gz
sharpr2_1.1.1.0.tar.gz(r-4.5-noble)sharpr2_1.1.1.0.tar.gz(r-4.4-noble)
sharpr2_1.1.1.0.tgz(r-4.4-emscripten)sharpr2_1.1.1.0.tgz(r-4.3-emscripten)
sharpr2.pdf |sharpr2.html
sharpr2/json (API)

# Install 'sharpr2' in R:
install.packages('sharpr2', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • hidra_ex - An example dataset including a region of one chromosome from an ATAC-STARR library

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 stars 9 scripts 114 downloads 1 mentions 5 exports 3 dependencies

Last updated 7 years agofrom:0e44fa19d3. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 04 2024
R-4.5-linuxOKDec 04 2024

Exports:call_fdrcall_sig_regcall_tile_regfind_regsharpr2

Dependencies:latticeMatrixmvtnorm