Package: sharpr2 1.1.1.0
Liang He
sharpr2: Estimating Regulatory Scores and Identifying ATAC-STARR Data
An algorithm for identifying high-resolution driver elements for datasets from a high-definition reporter assay library. Xinchen Wang, Liang He, Sarah Goggin, Alham Saadat, Li Wang, Melina Claussnitzer, Manolis Kellis (2017) <doi:10.1101/193136>.
Authors:
sharpr2_1.1.1.0.tar.gz
sharpr2_1.1.1.0.tar.gz(r-4.5-noble)sharpr2_1.1.1.0.tar.gz(r-4.4-noble)
sharpr2_1.1.1.0.tgz(r-4.4-emscripten)sharpr2_1.1.1.0.tgz(r-4.3-emscripten)
sharpr2.pdf |sharpr2.html✨
sharpr2/json (API)
| # Install 'sharpr2' in R: |
| install.packages('sharpr2', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- hidra_ex - An example dataset including a region of one chromosome from an ATAC-STARR library
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:0e44fa19d3. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 05 2024 |
| R-4.5-linux | OK | Sep 05 2024 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimating regularoty scores and identifying high resolution driver elements for ATAC-STARR data | sharpr2-package |
| call_fdr | call_fdr |
| call_sig_reg | call_sig_reg |
| call_tile_reg | call_tile_reg |
| find_reg | find_reg |
| An example dataset including a region of one chromosome from an ATAC-STARR library | hidra_ex |
| plot.sharpr2 | plot.sharpr2 |
| sharpr2 | sharpr2 |