Package: rsatscan 1.0.8

Scott Hostovich

rsatscan: Tools, Classes, and Methods for Interfacing with 'SaTScan' Stand-Alone Software

'SaTScan'(TM) <https://www.satscan.org> is software for finding regions in Time, Space, or Time-Space that have excess risk, based on scan statistics, and uses Monte Carlo hypothesis testing to generate P-values for these regions. The 'rsatscan' package provides functions for writing R data frames in 'SaTScan'-readable formats, for setting 'SaTScan' parameters, for running 'SaTScan' in the OS, and for reading the files that 'SaTScan' creates.

Authors:Ken Kleinman [aut], Scott Hostovich [cre], Amer Moosa [ctb]

rsatscan_1.0.8.tar.gz
rsatscan_1.0.8.tar.gz(r-4.5-noble)rsatscan_1.0.8.tar.gz(r-4.4-noble)
rsatscan_1.0.8.tgz(r-4.4-emscripten)rsatscan_1.0.8.tgz(r-4.3-emscripten)
rsatscan.pdf |rsatscan.html✨
rsatscan/json (API)
NEWS

# Install 'rsatscan' in R:
install.packages('rsatscan', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • NHumbersidecas - North Humberside leukemian and lymphoma example- cases
  • NHumbersidectl - North Humberside leukemian and lymphoma example- controls
  • NHumbersidegeo - North Humberside leukemian and lymphoma example- geography
  • NMcas - New Mexico Brain Cancer example- cases
  • NMgeo - New Mexico Brain Cancer example- geography
  • NMpop - New Mexico Brain Cancer example- population
  • NYCfevercas - New York City Fever example- cases
  • NYCfevergeo - New York City Fever example- geography

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

5.75 score 8 stars 35 scripts 285 downloads 10 mentions 15 exports 1 dependencies

Last updated 5 months agofrom:e14be1d958. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-linuxOKOct 25 2024

Exports:satscanss.optionsss.options.extrawrite.adjwrite.caswrite.ctlwrite.geowrite.grdwrite.hawrite.maxwrite.metwrite.nbrwrite.ntkwrite.popwrite.ss.prm

Dependencies:foreign

rsatscan

Ken Kleinman

Rendered fromrsatscan.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2024-06-27
Started: 2015-01-09

Simulation experiments with SaTScan and rsatscan

Ken Kleinman

Rendered fromsimulation.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2024-06-27
Started: 2015-01-09

Readme and manuals

Help Manual

Help pageTopics
Change list version of paramaters into char vectorcharlistopts
North Humberside leukemian and lymphoma example- casesNHumbersidecas
North Humberside leukemian and lymphoma example- controlsNHumbersidectl
North Humberside leukemian and lymphoma example- geographyNHumbersidegeo
New Mexico Brain Cancer example- casesNMcas
New Mexico Brain Cancer example- geographyNMgeo
New Mexico Brain Cancer example- populationNMpop
New York City Fever example- casesNYCfevercas
New York City Fever example- geographyNYCfevergeo
Methods for satscan-class objectsprint.satscan
Read SaTScan output filesread.col
Read SaTScan output filesread.gis
Read SaTScan output filesread.llr
Read SaTScan output filesread.rr
Read SaTScan output filesread.satscanmain
Read SaTScan output filesread.sci
R functions, a class, and methods for working with SaTScan stand-alone software.rsatscan-package rsatscan
Run SaTScan in the OSsatscan
find earliest SaTScan parameter set that contains specified parametersearch_for_param
Set or reset parameters to be used by SaTScanss.options
Add lines to the current SaTScan parameter listss.options.extra
Substitute new values into the input objectsubin
Methods for satscan-class objectssummary.satscan
Write a SaTScan adj filewrite.adj
Write a SaTScan cas (case) filewrite.cas
Write a SaTScan ctl (control) filewrite.ctl
Write a SaTScan geo filewrite.geo
Write a SaTScan grd (grid) filewrite.grd
Write a SaTScan ha (alternative hypothesis) filewrite.ha
Write a SaTScan max filewrite.max
Write a SaTScan met filewrite.met
Write a SaTScan nbr (neighbor) filewrite.nbr
Write a SaTScan ntk (network) filewrite.ntk
Write a SaTScan pop (population) filewrite.pop
Write the SaTScan parameter filewrite.ss.prm