Package: rphylopic 1.5.0
William Gearty
rphylopic: Get Silhouettes of Organisms from PhyloPic
Work with the PhyloPic Web Service (<http://api-docs.phylopic.org/v2/>) to fetch silhouette images of organisms. Includes functions for adding silhouettes to both base R plots and ggplot2 plots.
Authors:
rphylopic_1.5.0.tar.gz
rphylopic_1.5.0.tar.gz(r-4.5-noble)rphylopic_1.5.0.tar.gz(r-4.4-noble)
rphylopic_1.5.0.tgz(r-4.4-emscripten)rphylopic_1.5.0.tgz(r-4.3-emscripten)
rphylopic.pdf |rphylopic.html✨
rphylopic/json (API)
NEWS
| # Install 'rphylopic' in R: |
| install.packages('rphylopic', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/palaeoverse/rphylopic/issues
Pkgdown site:https://rphylopic.palaeoverse.org
Last updated 4 months agofrom:883793d1a7. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 04 2024 |
| R-4.5-linux | OK | Dec 04 2024 |
Exports:add_phylopicadd_phylopic_baseadd_phylopic_legendbrowse_phylopicflip_phylopicgeom_phylopicget_attributionget_phylopicget_uuidphylopic_key_glyphpick_phylopicrecolor_phylopicresolve_phylopicrotate_phylopicsave_phylopicscale_height_continuousscale_width_continuous
Dependencies:askpassbase64encclicolorspacecurlevaluatefansifarverggplot2gluegrImport2gtablehighrhttrisobandjpegjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpbapplypillarpkgconfigpngR6RColorBrewerrlangrsvgscalessystibbleutf8vctrsviridisLitewithrxfunXMLyaml
Advanced examples in base R
Rendered fromc-advanced-base.Rmdusingknitr::rmarkdownon Dec 04 2024.Last update: 2024-09-05
Started: 2023-06-30
Advanced examples in ggplot
Rendered fromb-advanced-ggplot.Rmdusingknitr::rmarkdownon Dec 04 2024.Last update: 2024-09-05
Started: 2023-06-30
Getting started with rphylopic
Rendered froma-getting-started.Rmdusingknitr::rmarkdownon Dec 04 2024.Last update: 2024-09-05
Started: 2023-06-30
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Annotate a ggplot plot with PhyloPics | add_phylopic |
| Add PhyloPics to a base R plot | add_phylopic_base |
| Add a PhyloPic legend for a base R plot | add_phylopic_legend |
| Browse PhyloPic for a given taxonomic name or uuid | browse_phylopic |
| Flip a PhyloPic silhouette along its horizontal and/or vertical axis | flip_phylopic |
| Geom for adding PhyloPic silhouettes to a plot | geom_phylopic |
| Get PhyloPic attribution data | get_attribution |
| Retrieve an image for a given PhyloPic uuid | get_phylopic print.phylopic print.Picture |
| Get a PhyloPic uuid | get_uuid |
| Use PhyloPics as legend key glyphs | phylopic_key_glyph |
| Pick a PhyloPic image from available options | pick_phylopic |
| Preview a PhyloPic silhouette | plot.phylopic plot.Picture plot_phylopic |
| Recolor a PhyloPic image | recolor_phylopic |
| Use a taxonomic name from another database to get a PhyloPic image UUID | resolve_phylopic |
| Rotate a PhyloPic silhouette | rotate_phylopic |
| Save a PhyloPic image | save_phylopic |
| Scales for phylopic height or width | scale_height_continuous scale_width_continuous |
