Package: riverdist 0.17.1

Matt Tyers

riverdist: River Network Distance Computation and Applications

Reads river network shape files and computes network distances. Also included are a variety of computation and graphical tools designed for fisheries telemetry research, such as minimum home range, kernel density estimation, and clustering analysis using empirical k-functions with a bootstrap envelope. Tools are also provided for editing the river networks, meaning there is no reliance on external software.

Authors:Matt Tyers [aut, cre]

riverdist_0.17.1.tar.gz
riverdist_0.17.1.tar.gz(r-4.5-noble)riverdist_0.17.1.tar.gz(r-4.4-noble)
riverdist_0.17.1.tgz(r-4.4-emscripten)riverdist_0.17.1.tgz(r-4.3-emscripten)
riverdist.pdf |riverdist.html✨
riverdist/json (API)
NEWS

# Install 'riverdist' in R:

install.packages('riverdist', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mbtyers/riverdist/issues

Datasets:

Gulk - Dataset: Gulkana River
Kenai1 - Dataset: Kenai River 1
Kenai2 - Dataset: Kenai River 2
Kenai3 - Dataset: Kenai River 3
KilleyW - Dataset: Killey River, West Channel
Koyukuk0 - Dataset: Koyukuk River 0
Koyukuk1 - Dataset: Koyukuk River 1
Koyukuk2 - Dataset: Koyukuk River 2
abstreams - Dataset: A-B Streams
abstreams0 - Dataset: A-B Streams 0
fakefish - Dataset: Fakefish
fakefish_density - Dataset: Fakefish Density
line98 - Dataset: Line 98 of Kenai River 1
smallset - Dataset: Smallset

4.88 score 1 stars 94 scripts 575 downloads 4 mentions 64 exports 13 dependencies

Last updated 14 days agofrom:a5c375236f. Checks:OK: 2. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Nov 08 2024
R-4.5-linux	OK	Nov 08 2024

Exports:addcumuldist addverts buildlookup buildsegroutes calculateconnections checkbraided checkbraidedTF cleanup cleanup_verts connectsegs densityanomaly detectroute dissolve highlightseg homerange homerangeoverlap isflowconnected kfunc line2network makeriverdensity mapbyname matbysurveylist mouthdist mouthdistbysurvey pdist pdisttot plothomerangeoverlap plotmatbysurveylist plotriverdensitypoints plotseq pointshp2segvert removeduplicates removemicrosegs removeunconnected riverdirection riverdirectionmat riverdirectionmatbysurvey riverdirectionseq riverdirectiontofrom riverdistance riverdistancelist riverdistancemat riverdistancematbysurvey riverdistanceseq riverdistancetofrom riverpoints routelist segvert2xy sequenceverts setmouth showends splitsegmentat splitsegments topologydots trimriver trimtopoints upstream upstreammat upstreammatbysurvey upstreamseq upstreamtofrom whoconnected xy2segvert zoomtoseg

Dependencies:class classInt DBI e1071 KernSmooth magrittr MASS proxy Rcpp s2 sf units wk

River Network Distance Computation and Applications with riverdist

Rendered fromriverdist_vignette.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2024-10-15
Started: 2016-06-02

Citation

Readme and manuals

Help Manual

Help page	Topics
River Network Distance Computation and Applications	riverdist-package riverdist
Dataset: A-B Streams	abstreams
Dataset: A-B Streams 0	abstreams0
Add Cumulative Distance to a River Network	addcumuldist
Add Vertices To Maintain a Minimum Distance Between Vertices	addverts
Build Lookup Tables for Fast Distance Computation	buildlookup
Build Segment Routes	buildsegroutes
Calculate the Connectivity Matrix for a River Network	calculateconnections
Check for Braiding in a River Network	checkbraided
Check for Braiding in a River Network	checkbraidedTF
Interactive Cleanup of a River Network	cleanup
Interactive Cleanup of the Vertices of Individual Segments	cleanup_verts
Connect Segments	connectsegs
Plot Difference from Mean Kernel Density Using River Distance	densityanomaly
Detect Route	detectroute
Dissolve	dissolve
Dataset: Fakefish	fakefish
Dataset: Fakefish Density	fakefish_density
Dataset: Gulkana River	Gulk
Highlight Segments	highlightseg
Home Range	homerange
The "homerange" Class	homerange-class
Home Range Overlap	homerangeoverlap
Check Flow-Connectedness	isflowconnected
Dataset: Kenai River 1	Kenai1
Dataset: Kenai River 2	Kenai2
Dataset: Kenai River 3	Kenai3
Plotting K-functions for a Set of Surveys	kfunc
Dataset: Killey River, West Channel	KilleyW
Dataset: Koyukuk River 0	Koyukuk0
Dataset: Koyukuk River 1	Koyukuk1
Dataset: Koyukuk River 2	Koyukuk2
Create a River Network Object from a Shapefile	line2network
Dataset: Line 98 of Kenai River 1 (Long-Lat)	line98
Calculate Kernel Density Using River Distance	makeriverdensity
Map Segments by Name	mapbyname
Generate List of Distance Matrix Between Observations, for All Individuals	matbysurveylist
Distance From Mouth	mouthdist
Distance From Mouth for All Observations of Individuals	mouthdistbysurvey
Pythagorean Distance	pdist
Total Pythagorean Distance	pdisttot
Plot Home Range	plot.homerange
Plot Kernel Density Using River Distance	plot.riverdensity plotriverdensity
Plotting a River Network	mapriver plot.rivernetwork
Plot Home Range Overlap	plothomerangeoverlap
Plot Upstream Distance Between Observations of All Individuals	plotmatbysurveylist
Plot Points Used for Kernel Density	plotriverdensitypoints
Plot Sequence of Observations	plotseq
Convert a Point Shapefile to River Locations	pointshp2segvert
Remove Duplicates	removeduplicates
Remove Segments that are Smaller than the Connectivity Tolerance	removemicrosegs
Remove Unconnected Segments	removeunconnected
The "riverdensity" Class	riverdensity riverdensity-class
River Direction	riverdirection
River Direction Matrix	riverdirectionmat
River Direction Matrix of All Observations of an Individual	riverdirectionmatbysurvey
River Travel Direction Between Sequential Observations	riverdirectionseq
River Direction Matrix between Two Datasets	riverdirectiontofrom
River Distance	riverdistance
Multiple River Distances	riverdistancelist
River Distance Matrix	riverdistancemat
River Distance Matrix of All Observations of an Individual	riverdistancematbysurvey
River Distance Between Sequential Observations	riverdistanceseq
River Distance Matrix between Two Datasets	riverdistancetofrom
The "rivernetwork" Class	rivernetwork rivernetwork-class
Draw Points from River Locations	riverpoints
Detect Multiple Routes	routelist
Convert River Locations to XY coordinates	segvert2xy
Store Vertices in Ascending Sequence	sequenceverts
Specify the Segment and Vertex of the Mouth of a River Network Object.	setmouth
Identify Vertex Coordinates of Segment Endpoints	showends
Dataset: Smallset	smallset
Split a Segment at a Specified Vertex	splitsegmentat
Split Segments by Endpoint Proximity	splitsegments
Check Connectivity of a River Network Object	topologydots
Trim a River Network Object to Specified Segments	trimriver
Trim a River Network to a Set of X-Y Coordinates	trimtopoints
Upstream River Distance	upstream
Upstream Distance Matrix	upstreammat
Upstream Distance Matrix of All Observations of an Individual	upstreammatbysurvey
Upstream Distance Between Sequential Observations	upstreamseq
Upstream Distance Matrix between Two Datasets	upstreamtofrom
Check Which Segments are Connected to a Given Segment.	whoconnected
Convert XY Coordinates to River Locations	xy2segvert
Zoom to segment	zoomtoseg