Package: ridgetorus 1.0.2

Eduardo García-Portugués

ridgetorus: PCA on the Torus via Density Ridges

Implementation of a Principal Component Analysis (PCA) in the torus via density ridge estimation. The main function, ridge_pca(), obtains the relevant density ridge for bivariate sine von Mises and bivariate wrapped Cauchy distribution models and provides the associated scores and variance decomposition. Auxiliary functions for evaluating, fitting, and sampling these models are also provided. The package provides replicability to García-Portugués and Prieto-Tirado (2023) <doi:10.1007/s11222-023-10273-9>.

Authors:Eduardo García-Portugués [aut, cre], Arturo Prieto-Tirado [aut]

ridgetorus_1.0.2.tar.gz
ridgetorus_1.0.2.tar.gz(r-4.5-noble)ridgetorus_1.0.2.tar.gz(r-4.4-noble)
ridgetorus_1.0.2.tgz(r-4.4-emscripten)ridgetorus_1.0.2.tgz(r-4.3-emscripten)
ridgetorus.pdf |ridgetorus.html✨
ridgetorus/json (API)
NEWS

# Install 'ridgetorus' in R:

install.packages('ridgetorus', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/egarpor/ridgetorus/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3

Datasets:

earthquakes - Japanese earthquakes dataset
santabarbara - Santa Barbara currents
wind - Texas wind dataset

2.00 score 9 scripts 176 downloads 30 exports 22 dependencies

Last updated 1 years agofrom:f036ed53ee. Checks:OK: 1 NOTE: 1. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Oct 08 2024
R-4.5-linux-x86_64	NOTE	Oct 08 2024

Exports:arclength_ridge_curve biv_lrt const_bvm d_bvm d_bwc d_bwn der_ridge_curve dist_ridge_curve fit_bvm_mle fit_bvm_mm fit_bwc_mle fit_bwc_mm fit_bwn_mle frechet_mean frechet_ss max_score_2 proj_ridge_curve r_bvm r_bwc r_bwn ridge_bvm ridge_bwc ridge_bwn ridge_curve ridge_fourier_fit ridge_pca ridge_scores show_ridge_pca torus_dist torus_pairs

Dependencies:boot circular codetools digest doFuture doRNG foreach future future.apply globals gsl iterators listenv mvtnorm parallelly Rcpp RcppArmadillo rngtools rootSolve rotasym sdetorus sphunif

ridgetorus: PCA on the Torus via Density Ridges

Eduardo García-Portugués and Arturo Prieto-Tirado

Rendered fromridgetorus.Rmdusingknitr::rmarkdownon Oct 08 2024.

Last update: 2023-08-28
Started: 2022-12-23

Help page	Topics
'ridgetorus': PCA on the Torus via Density Ridges	ridgetorus-package ridgetorus
Tests of homogeneity and independence in bivariate sine von Mises and wrapped Cauchy distributions	biv_lrt
Density evaluation, sampling, and parameter estimation of the bivariate sine von Mises distribution	bvm const_bvm d_bvm fit_bvm_mle fit_bvm_mm r_bvm
Density evaluation, sampling, and parameter estimation of the bivariate wrapped Cauchy distribution	bwc d_bwc fit_bwc_mle fit_bwc_mm r_bwc
Density evaluation, sampling, and parameter estimation of the bivariate wrapped normal distribution	bwn d_bwn fit_bwn_mle r_bwn
Japanese earthquakes dataset	earthquakes
Fréchet statistics on the torus	frechet frechet_mean frechet_ss
Fourier-fitted ridge curve and related utilities	arclength_ridge_curve der_ridge_curve dist_ridge_curve proj_ridge_curve ridge_curve
Connected component of the toroidal density ridge of a bivariate sine von Mises, bivariate wrapped Cauchy, and bivariate wrapped normal	ridge_bvm ridge_bwc ridge_bwn ridge_distr
Fourier expansion of a given curve	ridge_fourier_fit
Toroidal PCA via density ridges	ridge_pca
Scores and scales for Fourier-fitted ridge curves	max_score_2 ridge_scores
Santa Barbara currents	santabarbara
Illustration of toroidal PCA via density ridges	show_ridge_pca
Toroidal distances	torus_dist
Toroidal pairs plot	torus_pairs
Texas wind dataset	wind

Package: ridgetorus 1.0.2

ridgetorus: PCA on the Torus via Density Ridges

ridgetorus: PCA on the Torus via Density Ridges

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Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)