Overview | Input files | Estimation of QTL effects | LOD score | Extensions | 1. Self-genotype effects | 2. Composite interval mapping | 3. Epistasis in neighbor QTL effects | 5. Crossing design | References
Package: rNeighborQTL 1.1.2
Yasuhiro Sato
rNeighborQTL: Interval Mapping for Quantitative Trait Loci Underlying Neighbor Effects
To enable quantitative trait loci mapping of neighbor effects, this package extends a single-marker regression to interval mapping. The theoretical background of the method is described in Sato et al. (2021) <doi:10.1093/g3journal/jkab017>.
Authors:
rNeighborQTL_1.1.2.tar.gz
rNeighborQTL_1.1.2.zip(r-4.7-any)rNeighborQTL_1.1.2.zip(r-4.6-any)
rNeighborQTL_1.1.2.tar.gz(r-4.7-any)rNeighborQTL_1.1.2.tar.gz(r-4.6-any)
rNeighborQTL_1.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
rNeighborQTL/json (API)
| # Install 'rNeighborQTL' in R: |
| install.packages('rNeighborQTL', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:7ccb50985b. Checks:4 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 154 | ||
| source / vignettes | OK | 259 | ||
| linux-release | NOTE | 157 | ||
| windows-devel | NOTE | 166 | ||
| windows-release | NOTE | 87 | ||
| wasm-release | OK | 112 |
Exports:calc_pveeff_neighborint_neighbormin_distperm_neighborplot_neiscan_neighborsim_nei_qtl
Dependencies:gastonlatticeMatrixqtlRcppRcppEigenRcppParallel
