Package: rEDM 1.15.4
Joseph Park
rEDM: Empirical Dynamic Modeling ('EDM')
An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Authors:
rEDM_1.15.4.tar.gz
rEDM_1.15.4.tar.gz(r-4.7-arm64)rEDM_1.15.4.tar.gz(r-4.7-x86_64)rEDM_1.15.4.tar.gz(r-4.6-arm64)rEDM_1.15.4.tar.gz(r-4.6-x86_64)
rEDM_1.15.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rEDM/json (API)
NEWS
| # Install 'rEDM' in R: |
| install.packages('rEDM', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- block_3sp - Time series for a three-species coupled model.
- circle - 2-D timeseries of a circle.
- EvergladesFlow - Water flow to NE Everglades
- Lorenz5D - 5-D Lorenz'96
- paramecium_didinium - Time series for the Paramecium-Didinium laboratory experiment
- sardine_anchovy_sst - Time series for the California Current Anchovy-Sardine-SST system
- TentMap - Time series for a tent map with mu = 2.
- TentMapNoise - Time series of tent map plus noise.
- Thrips - Apple-blossom Thrips time series
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:72d86ce773. Checks:4 WARNING, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | WARNING | 156 | ||
| linux-devel-x86_64 | WARNING | 169 | ||
| source / vignettes | OK | 286 | ||
| linux-release-arm64 | WARNING | 167 | ||
| linux-release-x86_64 | WARNING | 166 | ||
| wasm-release | OK | 178 |
Exports:CCMComputeErrorEmbedEmbedDimensionMakeBlockMultiviewPredictIntervalPredictNonlinearSimplexSMapSurrogateData
Dependencies:RcppRcppThread
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Time series for a three-species coupled model. | block_3sp |
| Convergent cross mapping using simplex projection | CCM |
| 2-D timeseries of a circle. | circle |
| Compute error | ComputeError |
| Embed data with time lags | Embed |
| Optimal embedding dimension | EmbedDimension |
| Water flow to NE Everglades | EvergladesFlow |
| 5-D Lorenz'96 | Lorenz5D |
| Make embedded data block | MakeBlock |
| Forecasting using multiview embedding | Multiview |
| Time series for the Paramecium-Didinium laboratory experiment | paramecium_didinium |
| Forecast interval accuracy | PredictInterval |
| Test for nonlinear dynamics | PredictNonlinear |
| Empirical dynamic modeling | rEDM-package EDM |
| Time series for the California Current Anchovy-Sardine-SST system | sardine_anchovy_sst |
| Simplex forecasting | Simplex |
| SMap forecasting | SMap |
| Generate surrogate data for permutation/randomization tests | SurrogateData |
| Time series for a tent map with mu = 2. | TentMap |
| Time series of tent map plus noise. | TentMapNoise |
| Apple-blossom Thrips time series | Thrips |
