Package: qtl2fst 0.28

Karl W Broman

qtl2fst: Database Storage of Genotype Probabilities for QTL Mapping

Uses the 'fst' package to store genotype probabilities on disk for the 'qtl2' package. These genotype probabilities are a central data object for mapping quantitative trait loci (QTL), but they can be quite large. The facilities in this package enable the genotype probabilities to be stored on disk, leading to reduced memory usage with only a modest increase in computation time.

Authors:Karl W Broman [aut, cre], Brian S Yandell [aut], Petr Simecek [aut]

qtl2fst_0.28.tar.gz
qtl2fst_0.28.tar.gz(r-4.5-noble)qtl2fst_0.28.tar.gz(r-4.4-noble)
qtl2fst_0.28.tgz(r-4.4-emscripten)qtl2fst_0.28.tgz(r-4.3-emscripten)
qtl2fst.pdf |qtl2fst.html
qtl2fst/json (API)
NEWS

# Install 'qtl2fst' in R:
install.packages('qtl2fst', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rqtl/qtl2fst/issues

3.38 score 1 packages 16 scripts 222 downloads 13 exports 24 dependencies

Last updated 4 months agofrom:8ea35d9384. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 15 2024
R-4.5-linuxOKOct 15 2024

Exports:calc_genoprob_fstcbind.fst_genoprobfst_extractfst_filesfst_genoprobfst_genoprob_restorefst_pathfst_restorefst2calc_genoprobgenoprob_to_alleleprob_fstrbind.fst_genoprobreplace_pathsubset_fst_genoprob

Dependencies:bitbit64blobcachemclicpp11data.tableDBIfastmapfstfstcoregluejsonlitelifecyclememoisepkgconfigplogrqtl2RcppRcppEigenrlangRSQLitevctrsyaml

qtl2fst user guide

Rendered fromqtl2fst.Rmdusingknitr::rmarkdownon Oct 15 2024.

Last update: 2021-10-07
Started: 2020-07-30