Package: psychonetrics 0.15

Sacha Epskamp

psychonetrics: Structural Equation Modeling and Confirmatory Network Analysis

Multi-group (dynamical) structural equation models in combination with confirmatory network models from cross-sectional, time-series and panel data <doi:10.31234/osf.io/8ha93>. Allows for confirmatory testing and fit as well as exploratory model search.

Authors:Sacha Epskamp [aut, cre]

psychonetrics_0.15.tar.gz
psychonetrics_0.15.tar.gz(r-4.7-arm64)psychonetrics_0.15.tar.gz(r-4.7-x86_64)psychonetrics_0.15.tar.gz(r-4.6-arm64)psychonetrics_0.15.tar.gz(r-4.6-x86_64)
psychonetrics_0.15.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
psychonetrics/json (API)
NEWS

# Install 'psychonetrics' in R:
install.packages('psychonetrics', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sachaepskamp/psychonetrics/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • Jonas - Jonas dataset
  • NA2020 - Network Analysis 2020 Self-Report Data
  • StarWars - Star Wars dataset

On CRAN:

Conda:

openblascppopenmp

3.49 score 2 packages 57 scripts 765 downloads 3 mentions 94 exports 110 dependencies

Last updated from:a560284080. Checks:6 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK640
linux-devel-x86_64OK591
source / vignettesOK903
linux-release-arm64OK679
linux-release-x86_64OK613
wasm-releaseOK496

Exports:addfitaddMIsaddSEsaggregate_bootstrapsbifactorbootstrapchangedatacheckFishercheckJacobiancholeskyCIplotcomparecorrcovMLcovMLtoUBcovUBtoMLdiagonalizationMatrixdlvm1duplicationMatrixeliminationMatrixemergencystartesaesa_manualfactorscoresfind_penalized_lambdafitfixparfixstartfreepargenerategetmatrixgetVCOVggmgroupequalgroupfreegvaridentifyintersectionmodelIsinglatentgrowthlnmlogbookloop_psychonetricslrnmlvmmeta_ggmmeta_gvarmeta_lvmmeta_var1meta_varcovMIsml_gvarml_lnmml_lrnmml_lvmml_rnmml_ts_lvgvarml_tsdlvm1ml_varmodelsearchpanel_lvgvarpanelgvarpanellvgvarpanelvarparametersparequalpartialprunepenalizepenaltyVectorprecprecisionprunerefitresidresidualsri_clpmri_clpm_stationaryrnmrunmodelsetestimatorsetoptimizersetverboseshowsimplestructurestepuptransmodts_lvgvartsdlvm1unionmodelunpenalizeusecppvar1varcovwrite_psychonetrics

Dependencies:abindbackportsbase64encbootbslibcachemcheckmatecliclustercodetoolscolorspacecombinatcorpcorcpp11crayondata.tabledigestdplyrevaluatefarverfastmapfdrtoolfontawesomeforeachforeignFormulafsGAgenericsggplot2glassoglueGPArotationgridExtragtablegtoolshighrHmischtmlTablehtmltoolshtmlwidgetsigraphIsingSamplerisobanditeratorsjpegjquerylibjsonliteknitrlabelinglatticelavaanlifecyclelme4magrittrMASSMatrixmemoisemgcvmimeminqamnormtnlmenloptrnnetnumDerivoptimxpbapplypbivnormpbvpillarpkgconfigplyrpngpracmapsychpurrrqgraphquadprogR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshape2rlangrmarkdownroptimrpartrstudioapiS7sassscalesstringistringrtibbletidyrtidyselecttinytexutf8VCAvctrsviridisLitewithrxfunyaml

Readme and manuals

Help Manual

Help pageTopics
Structural Equation Modeling and Confirmatory Network Analysispsychonetrics-package psychonetrics
Aggregate Bootstrapped Modelsaggregate_bootstraps
Bi-factor modelsbifactor
Bootstrap a psychonetrics modelbootstrap
Change the data of a psychonetrics objectchangedata
Plot Analytic Confidence IntervalsCIplot
Model comparisoncompare print.psychonetrics_compare
Maximum likelihood covariance estimatecovML covMLtoUB covUBtoML
Diagnostic functionscheckFisher checkJacobian
Lag-1 dynamic latent variable model family of psychonetrics models for panel datadlvm1 panelgvar panellvgvar panelvar panel_lvgvar
Model matrices used in derivativesdiagonalizationMatrix duplicationMatrix eliminationMatrix
Reset starting values to simple defaultsemergencystart
Ergodic Subspace Analysisesa esa_manual plot.esa plot.esa_manual print.esa print.esa_manual
Compute factor scoresfactorscores
Automated Lambda Selection for Penalized Estimationapply_beta_min compute_lambda_max compute_penalized_ebic find_penalized_lambda
Print fit indicesfit
Parameters modificationfixpar freepar
Attempt to Fix Starting Valuesfixstart
Generate data from a fitted psychonetrics objectgenerate
Extract an estimated matrixgetmatrix
Obtain the asymptotic covariance matrixgetVCOV
Group equality constrainsgroupequal groupfree
Ising modelIsing
Jonas datasetJonas
Latnet growth curve modellatentgrowth
Retrieve the psychonetrics logbooklogbook
Parallel loop for psychonetricsloop_psychonetrics
Continuous latent variable family of psychonetrics modelslnm lrnm lvm rnm
Meta-analytic latent variable modelmeta_lvm
Meta-analytic VAR(1) modelmeta_gvar meta_var1
Variance-covariance and GGM meta analysismeta_ggm meta_varcov
Print modification indicesMIs
Multi-level latent variable model familyml_lnm ml_lrnm ml_lvm ml_rnm
Multi-level Lag-1 dynamic latent variable model family of psychonetrics models for time-series dataml_gvar ml_tsdlvm1 ml_ts_lvgvar ml_var
Stepwise model searchmodelsearch
Network Analysis 2020 Self-Report DataNA2020
Print parameter estimatesparameters
Set equality constrains across parametersparequal
Partial pruning of multi-group modelspartialprune
Penalized Maximum Likelihood Functionspenalize penaltyVector refit unpenalize
Stepdown model search by pruning non-significant parameters.prune
Class '"psychonetrics_bootstrap"'psychonetrics_bootstrap-class show,psychonetrics_bootstrap-method
Class '"psychonetrics"'psychonetrics_log-class show,psychonetrics_log-method
Model updating functionsaddfit addMIs addSEs identify
Class '"psychonetrics"'psychonetrics-class psychonetrics_samplestats-class resid,psychonetrics-method residuals,psychonetrics-method sessionInfo-class show,psychonetrics-method
Random intercept cross-lagged panel modelsri_clpm ri_clpm_stationary
Run a psychonetrics modelrunmodel
Convenience functionssetestimator setoptimizer usecpp
Should messages of computation progress be printed?setverbose
Generate factor loadings matrix with simple structuresimplestructure
Star Wars datasetStarWars
Stepup model search along modification indicesstepup
Transform between model typestransmod
Lag-1 dynamic latent variable model family of psychonetrics models for time-series datatsdlvm1 ts_lvgvar
Unify models across groupsintersectionmodel unionmodel
Lag-1 vector autoregression family of psychonetrics modelsgvar var1
Variance-covariance family of psychonetrics modelscholesky corr ggm prec precision varcov
Write comprehensive model output to a text filewrite_psychonetrics